Hb_002675_120

Information

Type -
Description -
Location Contig2675: 92599-110047
Sequence    

Annotation

kegg
ID rcu:RCOM_0894660
description DNA-repair protein xrcc1, putative
nr
ID XP_002517520.1
description DNA-repair protein xrcc1, putative [Ricinus communis]
swissprot
ID Q24JK4
description DNA-repair protein XRCC1 OS=Arabidopsis thaliana GN=XRCC1 PE=1 SV=1
trembl
ID B9RUV1
description DNA-repair protein xrcc1, putative OS=Ricinus communis GN=RCOM_0894660 PE=4 SV=1
Gene Ontology
ID GO:0005515
description dna-repair protein xrcc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27855: 91523-92010
cDNA
(Sanger)
(ID:Location)		 024_E06r.ab1: 91524-92010

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_120 0.0 - - DNA-repair protein xrcc1, putative [Ricinus communis]
2 Hb_006683_010 0.1773267424 - - cell wall invertase [Manihot esculenta]
3 Hb_000160_100 0.1896864496 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
4 Hb_000050_130 0.2281365506 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
5 Hb_001652_110 0.246904417 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
6 Hb_006683_030 0.2515793517 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_002849_150 0.2594033765 - - hypothetical protein JCGZ_14367 [Jatropha curcas]
8 Hb_041184_010 0.2677376626 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_002774_010 0.270016094 - - -
10 Hb_001524_020 0.2711503996 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
11 Hb_005007_040 0.2718366724 - - hypothetical protein VITISV_032357 [Vitis vinifera]
12 Hb_001638_220 0.2805966879 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002092_040 0.2823297311 - - PREDICTED: protein YLS3 [Jatropha curcas]
14 Hb_031862_030 0.2859155906 - - Cell division cycle protein, putative [Ricinus communis]
15 Hb_002774_040 0.2865996104 - - PREDICTED: annexin D1 [Jatropha curcas]
16 Hb_000455_100 0.2888970643 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_188487_010 0.2906625622 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
18 Hb_008779_010 0.2931617785 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
19 Hb_008643_010 0.2944421619 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
20 Hb_001780_010 0.2951136604 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]

Gene co-expression network

sample Hb_002675_120 Hb_002675_120 Hb_006683_010 Hb_006683_010 Hb_002675_120--Hb_006683_010 Hb_000160_100 Hb_000160_100 Hb_002675_120--Hb_000160_100 Hb_000050_130 Hb_000050_130 Hb_002675_120--Hb_000050_130 Hb_001652_110 Hb_001652_110 Hb_002675_120--Hb_001652_110 Hb_006683_030 Hb_006683_030 Hb_002675_120--Hb_006683_030 Hb_002849_150 Hb_002849_150 Hb_002675_120--Hb_002849_150 Hb_006683_010--Hb_000050_130 Hb_006683_010--Hb_001652_110 Hb_008779_010 Hb_008779_010 Hb_006683_010--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_006683_010--Hb_008643_010 Hb_006683_010--Hb_000160_100 Hb_000160_100--Hb_006683_030 Hb_000160_100--Hb_002849_150 Hb_002774_010 Hb_002774_010 Hb_000160_100--Hb_002774_010 Hb_041184_010 Hb_041184_010 Hb_000160_100--Hb_041184_010 Hb_000050_130--Hb_001652_110 Hb_000050_130--Hb_008779_010 Hb_000050_130--Hb_008643_010 Hb_054362_010 Hb_054362_010 Hb_000050_130--Hb_054362_010 Hb_000065_050 Hb_000065_050 Hb_001652_110--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_001652_110--Hb_000574_550 Hb_005007_040 Hb_005007_040 Hb_001652_110--Hb_005007_040 Hb_012071_010 Hb_012071_010 Hb_001652_110--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_001652_110--Hb_012295_020 Hb_005896_010 Hb_005896_010 Hb_006683_030--Hb_005896_010 Hb_002774_040 Hb_002774_040 Hb_006683_030--Hb_002774_040 Hb_002656_010 Hb_002656_010 Hb_006683_030--Hb_002656_010 Hb_008749_090 Hb_008749_090 Hb_006683_030--Hb_008749_090 Hb_001004_100 Hb_001004_100 Hb_002849_150--Hb_001004_100 Hb_107201_010 Hb_107201_010 Hb_002849_150--Hb_107201_010 Hb_000135_050 Hb_000135_050 Hb_002849_150--Hb_000135_050 Hb_000922_010 Hb_000922_010 Hb_002849_150--Hb_000922_010 Hb_012753_190 Hb_012753_190 Hb_002849_150--Hb_012753_190 Hb_029510_110 Hb_029510_110 Hb_002849_150--Hb_029510_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0900842 0.0212968 0.0759895 0.0188283 0.129513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0336138 1.4999 3.60238 0.604684

CAGE analysis