Hb_002675_200

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig2675: 182972-192206
Sequence    

Annotation

kegg
ID rcu:RCOM_0895150
description Auxin-responsive protein IAA1, putative
nr
ID XP_002517529.1
description Auxin-responsive protein IAA1, putative [Ricinus communis]
swissprot
ID Q38832
description Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2
trembl
ID B9RUW0
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_0895150 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27867: 182930-183104 , PASA_asmbl_27868: 183180-185836 , PASA_asmbl_27869: 190750-192115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_200 0.0 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
2 Hb_001470_070 0.1477677017 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_128524_020 0.201934477 - - PREDICTED: aspartic proteinase-like protein 2 isoform X2 [Jatropha curcas]
4 Hb_011618_100 0.2149457111 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
5 Hb_128486_010 0.2198581623 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
6 Hb_089140_110 0.2284131976 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_008768_020 0.2291364397 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
8 Hb_040359_010 0.2330536567 - - triacylglycerol lipase, putative [Ricinus communis]
9 Hb_091889_020 0.237041561 - - -
10 Hb_000049_240 0.2374244385 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
11 Hb_031822_010 0.2386705986 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
12 Hb_002309_050 0.2431102577 - - beta-carotene hydroxylase, putative [Ricinus communis]
13 Hb_000072_190 0.2450880964 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
14 Hb_003147_070 0.2451386069 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
15 Hb_000813_160 0.2455999846 - - hypothetical protein PRUPE_ppa013181mg [Prunus persica]
16 Hb_003633_100 0.2469896016 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
17 Hb_006503_010 0.2512861233 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_006018_050 0.2525232979 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
19 Hb_000913_080 0.252758274 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
20 Hb_011972_010 0.2534813926 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002675_200 Hb_002675_200 Hb_001470_070 Hb_001470_070 Hb_002675_200--Hb_001470_070 Hb_128524_020 Hb_128524_020 Hb_002675_200--Hb_128524_020 Hb_011618_100 Hb_011618_100 Hb_002675_200--Hb_011618_100 Hb_128486_010 Hb_128486_010 Hb_002675_200--Hb_128486_010 Hb_089140_110 Hb_089140_110 Hb_002675_200--Hb_089140_110 Hb_008768_020 Hb_008768_020 Hb_002675_200--Hb_008768_020 Hb_007145_010 Hb_007145_010 Hb_001470_070--Hb_007145_010 Hb_006503_010 Hb_006503_010 Hb_001470_070--Hb_006503_010 Hb_005144_190 Hb_005144_190 Hb_001470_070--Hb_005144_190 Hb_001322_030 Hb_001322_030 Hb_001470_070--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001470_070--Hb_034904_010 Hb_002849_140 Hb_002849_140 Hb_128524_020--Hb_002849_140 Hb_004965_050 Hb_004965_050 Hb_128524_020--Hb_004965_050 Hb_031822_010 Hb_031822_010 Hb_128524_020--Hb_031822_010 Hb_003001_020 Hb_003001_020 Hb_128524_020--Hb_003001_020 Hb_168707_040 Hb_168707_040 Hb_128524_020--Hb_168707_040 Hb_000913_080 Hb_000913_080 Hb_011618_100--Hb_000913_080 Hb_000813_160 Hb_000813_160 Hb_011618_100--Hb_000813_160 Hb_091889_020 Hb_091889_020 Hb_011618_100--Hb_091889_020 Hb_027654_080 Hb_027654_080 Hb_011618_100--Hb_027654_080 Hb_014720_050 Hb_014720_050 Hb_011618_100--Hb_014720_050 Hb_002284_080 Hb_002284_080 Hb_011618_100--Hb_002284_080 Hb_003633_100 Hb_003633_100 Hb_128486_010--Hb_003633_100 Hb_128486_010--Hb_031822_010 Hb_128486_010--Hb_089140_110 Hb_000072_190 Hb_000072_190 Hb_128486_010--Hb_000072_190 Hb_000352_200 Hb_000352_200 Hb_128486_010--Hb_000352_200 Hb_000020_100 Hb_000020_100 Hb_128486_010--Hb_000020_100 Hb_089140_110--Hb_003633_100 Hb_089140_110--Hb_000072_190 Hb_089140_110--Hb_031822_010 Hb_101146_010 Hb_101146_010 Hb_089140_110--Hb_101146_010 Hb_005701_110 Hb_005701_110 Hb_089140_110--Hb_005701_110 Hb_006018_050 Hb_006018_050 Hb_089140_110--Hb_006018_050 Hb_008768_020--Hb_005701_110 Hb_003147_070 Hb_003147_070 Hb_008768_020--Hb_003147_070 Hb_000529_280 Hb_000529_280 Hb_008768_020--Hb_000529_280 Hb_005181_160 Hb_005181_160 Hb_008768_020--Hb_005181_160 Hb_000057_140 Hb_000057_140 Hb_008768_020--Hb_000057_140 Hb_000025_370 Hb_000025_370 Hb_008768_020--Hb_000025_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.202538 45.9379 38.2047 20.6478 0.0128773 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28914 43.4726 9.35199 12.4443 3.14464

CAGE analysis