Hb_002675_210

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2675: 198505-201449
Sequence    

Annotation

kegg
ID cit:102611807
description probable disease resistance protein At5g63020-like
nr
ID XP_006465455.1
description PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
swissprot
ID Q8L3R3
description Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2
trembl
ID B9RUW1
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0895260 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_210 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
2 Hb_002805_100 0.059655964 - - Receptor-like protein 12 [Morus notabilis]
3 Hb_000988_010 0.1836299908 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
4 Hb_045985_010 0.1852072419 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
5 Hb_019733_020 0.1911406186 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
6 Hb_006615_110 0.2119688259 transcription factor TF Family: bZIP hypothetical protein JCGZ_11777 [Jatropha curcas]
7 Hb_011120_030 0.213521862 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
8 Hb_071433_010 0.2202701999 - - lipid binding protein, putative [Ricinus communis]
9 Hb_001628_060 0.2239683417 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
10 Hb_001862_080 0.2260777298 - - hypothetical protein RCOM_1154950 [Ricinus communis]
11 Hb_115445_010 0.2271739367 - - -
12 Hb_001488_120 0.2304731174 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
13 Hb_004319_010 0.2318293225 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
14 Hb_002228_130 0.2325019348 - - conserved hypothetical protein [Ricinus communis]
15 Hb_071116_010 0.2347286167 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
16 Hb_000190_160 0.237077873 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
17 Hb_000556_030 0.241167394 - - PREDICTED: probable carboxylesterase 9 [Jatropha curcas]
18 Hb_000270_050 0.2479243087 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
19 Hb_002970_030 0.2484824447 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000039_080 0.2488666327 - - cyclin d, putative [Ricinus communis]

Gene co-expression network

sample Hb_002675_210 Hb_002675_210 Hb_002805_100 Hb_002805_100 Hb_002675_210--Hb_002805_100 Hb_000988_010 Hb_000988_010 Hb_002675_210--Hb_000988_010 Hb_045985_010 Hb_045985_010 Hb_002675_210--Hb_045985_010 Hb_019733_020 Hb_019733_020 Hb_002675_210--Hb_019733_020 Hb_006615_110 Hb_006615_110 Hb_002675_210--Hb_006615_110 Hb_011120_030 Hb_011120_030 Hb_002675_210--Hb_011120_030 Hb_002805_100--Hb_045985_010 Hb_002805_100--Hb_000988_010 Hb_002805_100--Hb_019733_020 Hb_002805_100--Hb_011120_030 Hb_115445_010 Hb_115445_010 Hb_002805_100--Hb_115445_010 Hb_000988_010--Hb_006615_110 Hb_000988_010--Hb_045985_010 Hb_187739_010 Hb_187739_010 Hb_000988_010--Hb_187739_010 Hb_000988_010--Hb_019733_020 Hb_001518_050 Hb_001518_050 Hb_000988_010--Hb_001518_050 Hb_001862_080 Hb_001862_080 Hb_045985_010--Hb_001862_080 Hb_045985_010--Hb_006615_110 Hb_045985_010--Hb_187739_010 Hb_048987_020 Hb_048987_020 Hb_019733_020--Hb_048987_020 Hb_071433_010 Hb_071433_010 Hb_019733_020--Hb_071433_010 Hb_000039_080 Hb_000039_080 Hb_019733_020--Hb_000039_080 Hb_087314_010 Hb_087314_010 Hb_019733_020--Hb_087314_010 Hb_036602_010 Hb_036602_010 Hb_019733_020--Hb_036602_010 Hb_007125_020 Hb_007125_020 Hb_006615_110--Hb_007125_020 Hb_008196_010 Hb_008196_010 Hb_006615_110--Hb_008196_010 Hb_006615_110--Hb_019733_020 Hb_006615_110--Hb_187739_010 Hb_011120_030--Hb_071433_010 Hb_000270_790 Hb_000270_790 Hb_011120_030--Hb_000270_790 Hb_000190_160 Hb_000190_160 Hb_011120_030--Hb_000190_160 Hb_000011_260 Hb_000011_260 Hb_011120_030--Hb_000011_260 Hb_036029_020 Hb_036029_020 Hb_011120_030--Hb_036029_020 Hb_003777_150 Hb_003777_150 Hb_011120_030--Hb_003777_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00603156 0.0328288 0.0778318 0.0146606 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0051898 0

CAGE analysis