Hb_002675_230

Information

Type -
Description -
Location Contig2675: 218998-221321
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08430g
description POPTRDRAFT_256678; In2-1 family protein
nr
ID XP_011048433.1
description PREDICTED: glutathione S-transferase L3-like [Populus euphratica]
swissprot
ID Q9LZ06
description Glutathione S-transferase L3 OS=Arabidopsis thaliana GN=GSTL3 PE=2 SV=1
trembl
ID D2WL72
description Lambda class glutathione transferase GSTL2 OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005737
description glutathione s-transferase l3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_230 0.0 - - PREDICTED: glutathione S-transferase L3-like [Populus euphratica]
2 Hb_001689_070 0.1207566731 - - cytochrome P450, putative [Ricinus communis]
3 Hb_004306_130 0.1496405206 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
4 Hb_001244_050 0.1550729503 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
5 Hb_000866_040 0.1565949781 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
6 Hb_009102_010 0.1626545315 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_004324_320 0.1721229097 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
8 Hb_000260_750 0.1742769013 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
9 Hb_002601_140 0.1761383354 - - signal transducer, putative [Ricinus communis]
10 Hb_000215_130 0.1819573283 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
11 Hb_004724_180 0.1830728765 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
12 Hb_001285_020 0.1832786248 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_010632_010 0.1835525569 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
14 Hb_000880_040 0.1854754475 - - -
15 Hb_001500_080 0.1865249746 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
16 Hb_001266_130 0.1875216222 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
17 Hb_023732_080 0.1886872793 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_004635_070 0.1888559915 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
19 Hb_001186_120 0.1890767973 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
20 Hb_000934_240 0.1893913522 - - PREDICTED: peroxidase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_230 Hb_002675_230 Hb_001689_070 Hb_001689_070 Hb_002675_230--Hb_001689_070 Hb_004306_130 Hb_004306_130 Hb_002675_230--Hb_004306_130 Hb_001244_050 Hb_001244_050 Hb_002675_230--Hb_001244_050 Hb_000866_040 Hb_000866_040 Hb_002675_230--Hb_000866_040 Hb_009102_010 Hb_009102_010 Hb_002675_230--Hb_009102_010 Hb_004324_320 Hb_004324_320 Hb_002675_230--Hb_004324_320 Hb_005568_050 Hb_005568_050 Hb_001689_070--Hb_005568_050 Hb_000215_130 Hb_000215_130 Hb_001689_070--Hb_000215_130 Hb_006469_090 Hb_006469_090 Hb_001689_070--Hb_006469_090 Hb_001689_070--Hb_000866_040 Hb_002893_190 Hb_002893_190 Hb_001689_070--Hb_002893_190 Hb_004306_130--Hb_000866_040 Hb_000416_190 Hb_000416_190 Hb_004306_130--Hb_000416_190 Hb_001266_130 Hb_001266_130 Hb_004306_130--Hb_001266_130 Hb_002095_050 Hb_002095_050 Hb_004306_130--Hb_002095_050 Hb_005993_030 Hb_005993_030 Hb_004306_130--Hb_005993_030 Hb_002276_030 Hb_002276_030 Hb_001244_050--Hb_002276_030 Hb_008878_020 Hb_008878_020 Hb_001244_050--Hb_008878_020 Hb_000917_200 Hb_000917_200 Hb_001244_050--Hb_000917_200 Hb_016687_010 Hb_016687_010 Hb_001244_050--Hb_016687_010 Hb_000212_270 Hb_000212_270 Hb_001244_050--Hb_000212_270 Hb_000866_040--Hb_005993_030 Hb_001135_010 Hb_001135_010 Hb_000866_040--Hb_001135_010 Hb_002918_120 Hb_002918_120 Hb_000866_040--Hb_002918_120 Hb_004446_060 Hb_004446_060 Hb_000866_040--Hb_004446_060 Hb_001500_080 Hb_001500_080 Hb_000866_040--Hb_001500_080 Hb_001285_020 Hb_001285_020 Hb_009102_010--Hb_001285_020 Hb_000260_750 Hb_000260_750 Hb_009102_010--Hb_000260_750 Hb_000500_360 Hb_000500_360 Hb_009102_010--Hb_000500_360 Hb_000880_040 Hb_000880_040 Hb_009102_010--Hb_000880_040 Hb_002025_290 Hb_002025_290 Hb_009102_010--Hb_002025_290 Hb_078582_010 Hb_078582_010 Hb_009102_010--Hb_078582_010 Hb_170023_010 Hb_170023_010 Hb_004324_320--Hb_170023_010 Hb_000147_020 Hb_000147_020 Hb_004324_320--Hb_000147_020 Hb_004324_320--Hb_000260_750 Hb_000072_110 Hb_000072_110 Hb_004324_320--Hb_000072_110 Hb_004324_320--Hb_000880_040 Hb_000365_440 Hb_000365_440 Hb_004324_320--Hb_000365_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.233995 0.576424 4.25674 0.997523 0.166469 0.152953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.062608 0 2.52064 3.59591

CAGE analysis