Hb_002677_020

Information

Type -
Description -
Location Contig2677: 82867-85719
Sequence    

Annotation

kegg
ID rcu:RCOM_1354530
description hypothetical protein
nr
ID XP_012082426.1
description PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S0G7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1354530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27887: 82994-85678 , PASA_asmbl_27888: 84183-85678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002677_020 0.0 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
2 Hb_000733_180 0.0795344794 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
3 Hb_008566_030 0.0846829601 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
4 Hb_001489_110 0.0917356357 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
5 Hb_000403_070 0.0952285938 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_005016_040 0.1003454544 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
7 Hb_006153_060 0.1008701901 - - catalytic, putative [Ricinus communis]
8 Hb_000309_130 0.104201062 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
9 Hb_006469_080 0.1046418048 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000140_090 0.1051098635 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
11 Hb_000505_130 0.1051270036 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
12 Hb_001892_070 0.1071474587 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
13 Hb_005843_140 0.1073127121 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
14 Hb_001754_080 0.1073382622 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
15 Hb_000615_050 0.1075433109 - - Potassium transporter 11 family protein [Populus trichocarpa]
16 Hb_001662_130 0.1086302438 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
17 Hb_001013_030 0.109042615 - - GTP-binding protein yptv3, putative [Ricinus communis]
18 Hb_006740_030 0.1092709797 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
19 Hb_000110_140 0.1106769274 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
20 Hb_000928_070 0.1108213022 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002677_020 Hb_002677_020 Hb_000733_180 Hb_000733_180 Hb_002677_020--Hb_000733_180 Hb_008566_030 Hb_008566_030 Hb_002677_020--Hb_008566_030 Hb_001489_110 Hb_001489_110 Hb_002677_020--Hb_001489_110 Hb_000403_070 Hb_000403_070 Hb_002677_020--Hb_000403_070 Hb_005016_040 Hb_005016_040 Hb_002677_020--Hb_005016_040 Hb_006153_060 Hb_006153_060 Hb_002677_020--Hb_006153_060 Hb_000309_130 Hb_000309_130 Hb_000733_180--Hb_000309_130 Hb_001013_030 Hb_001013_030 Hb_000733_180--Hb_001013_030 Hb_000436_130 Hb_000436_130 Hb_000733_180--Hb_000436_130 Hb_000928_070 Hb_000928_070 Hb_000733_180--Hb_000928_070 Hb_003124_150 Hb_003124_150 Hb_000733_180--Hb_003124_150 Hb_001307_030 Hb_001307_030 Hb_008566_030--Hb_001307_030 Hb_001541_120 Hb_001541_120 Hb_008566_030--Hb_001541_120 Hb_000116_260 Hb_000116_260 Hb_008566_030--Hb_000116_260 Hb_001514_120 Hb_001514_120 Hb_008566_030--Hb_001514_120 Hb_007416_060 Hb_007416_060 Hb_008566_030--Hb_007416_060 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_002995_050 Hb_002995_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001269_190 Hb_001269_190 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010 Hb_006846_150 Hb_006846_150 Hb_000403_070--Hb_006846_150 Hb_140627_010 Hb_140627_010 Hb_000403_070--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_000403_070--Hb_001240_010 Hb_000465_070 Hb_000465_070 Hb_000403_070--Hb_000465_070 Hb_000457_290 Hb_000457_290 Hb_000403_070--Hb_000457_290 Hb_008421_020 Hb_008421_020 Hb_005016_040--Hb_008421_020 Hb_013405_020 Hb_013405_020 Hb_005016_040--Hb_013405_020 Hb_000140_090 Hb_000140_090 Hb_005016_040--Hb_000140_090 Hb_000811_070 Hb_000811_070 Hb_005016_040--Hb_000811_070 Hb_005167_010 Hb_005167_010 Hb_005016_040--Hb_005167_010 Hb_000080_130 Hb_000080_130 Hb_005016_040--Hb_000080_130 Hb_002811_150 Hb_002811_150 Hb_006153_060--Hb_002811_150 Hb_002239_050 Hb_002239_050 Hb_006153_060--Hb_002239_050 Hb_000035_480 Hb_000035_480 Hb_006153_060--Hb_000035_480 Hb_006153_060--Hb_140627_010 Hb_006153_060--Hb_000403_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.54577 12.149 16.1893 28.4959 5.37026 9.85164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2549 34.1326 24.5937 10.3766 24.6669

CAGE analysis