Hb_002678_020

Information

Type -
Description -
Location Contig2678: 48898-51066
Sequence    

Annotation

kegg
ID rcu:RCOM_1095670
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012083281.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
swissprot
ID Q9SIT7
description Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
trembl
ID B9SF96
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1095670 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g13600-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27893: 49857-50365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002678_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
2 Hb_001507_020 0.0613484472 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
3 Hb_007483_100 0.0703620604 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
4 Hb_000427_050 0.0731606367 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000204_210 0.0788610441 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
6 Hb_000000_250 0.0843002427 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
7 Hb_002311_040 0.0851930911 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
8 Hb_004452_010 0.0882699433 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
9 Hb_034585_060 0.0895189769 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
10 Hb_009486_200 0.0898502199 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
11 Hb_001159_100 0.0916296096 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
12 Hb_008500_010 0.0925764273 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
13 Hb_004684_010 0.0932509296 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
14 Hb_000577_010 0.0947087451 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
15 Hb_004374_070 0.0958402997 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
16 Hb_000007_150 0.0972427402 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
17 Hb_000723_130 0.0991893891 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
18 Hb_001975_160 0.0991977457 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_011242_040 0.0993178002 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_003464_060 0.1016104268 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]

Gene co-expression network

sample Hb_002678_020 Hb_002678_020 Hb_001507_020 Hb_001507_020 Hb_002678_020--Hb_001507_020 Hb_007483_100 Hb_007483_100 Hb_002678_020--Hb_007483_100 Hb_000427_050 Hb_000427_050 Hb_002678_020--Hb_000427_050 Hb_000204_210 Hb_000204_210 Hb_002678_020--Hb_000204_210 Hb_000000_250 Hb_000000_250 Hb_002678_020--Hb_000000_250 Hb_002311_040 Hb_002311_040 Hb_002678_020--Hb_002311_040 Hb_001975_160 Hb_001975_160 Hb_001507_020--Hb_001975_160 Hb_004684_010 Hb_004684_010 Hb_001507_020--Hb_004684_010 Hb_001584_150 Hb_001584_150 Hb_001507_020--Hb_001584_150 Hb_003464_060 Hb_003464_060 Hb_001507_020--Hb_003464_060 Hb_007757_110 Hb_007757_110 Hb_001507_020--Hb_007757_110 Hb_004052_090 Hb_004052_090 Hb_007483_100--Hb_004052_090 Hb_004374_070 Hb_004374_070 Hb_007483_100--Hb_004374_070 Hb_009178_030 Hb_009178_030 Hb_007483_100--Hb_009178_030 Hb_000206_240 Hb_000206_240 Hb_007483_100--Hb_000206_240 Hb_000258_270 Hb_000258_270 Hb_007483_100--Hb_000258_270 Hb_001159_100 Hb_001159_100 Hb_000427_050--Hb_001159_100 Hb_029584_130 Hb_029584_130 Hb_000427_050--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000427_050--Hb_000007_150 Hb_001266_060 Hb_001266_060 Hb_000427_050--Hb_001266_060 Hb_004452_010 Hb_004452_010 Hb_000427_050--Hb_004452_010 Hb_000204_210--Hb_001584_150 Hb_008500_010 Hb_008500_010 Hb_000204_210--Hb_008500_010 Hb_000204_210--Hb_001507_020 Hb_001141_390 Hb_001141_390 Hb_000204_210--Hb_001141_390 Hb_009486_200 Hb_009486_200 Hb_000204_210--Hb_009486_200 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_001898_220 Hb_001898_220 Hb_000000_250--Hb_001898_220 Hb_189003_080 Hb_189003_080 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020 Hb_000723_130 Hb_000723_130 Hb_002311_040--Hb_000723_130 Hb_002942_100 Hb_002942_100 Hb_002311_040--Hb_002942_100 Hb_002311_040--Hb_004684_010 Hb_002311_040--Hb_009486_200 Hb_002311_040--Hb_008500_010 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62974 1.80417 0.708481 0.731896 1.4914 3.11804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5682 1.89962 3.82576 1.26511 1.47881

CAGE analysis