Hb_002681_020

Information

Type -
Description -
Location Contig2681: 18803-22392
Sequence    

Annotation

kegg
ID rcu:RCOM_1064700
description aldose 1-epimerase, putative
nr
ID XP_002521479.1
description aldose 1-epimerase, putative [Ricinus communis]
swissprot
ID Q40784
description Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1
trembl
ID B9S660
description Aldose 1-epimerase, putative OS=Ricinus communis GN=RCOM_1064700 PE=4 SV=1
Gene Ontology
ID GO:0016853
description glucose-6-phosphate 1-epimerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27911: 18936-22359 , PASA_asmbl_27912: 18936-20931 , PASA_asmbl_27913: 18962-22359
cDNA
(Sanger)
(ID:Location)		 003_M19.ab1: 18936-21829 , 007_E20.ab1: 18936-21805 , 048_N07.ab1: 18936-20931

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_020 0.0 - - aldose 1-epimerase, putative [Ricinus communis]
2 Hb_001776_110 0.0869484703 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
3 Hb_003052_100 0.0877533816 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_004812_010 0.0916746726 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
5 Hb_000665_040 0.0935466556 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
6 Hb_004310_030 0.0938993048 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
7 Hb_008554_020 0.0974322185 - - -
8 Hb_002007_310 0.0974448097 - - cyclin family protein [Populus trichocarpa]
9 Hb_001671_080 0.0985624284 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_003777_180 0.0986010607 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
11 Hb_000041_080 0.0986685956 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
12 Hb_026527_030 0.0987504438 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
13 Hb_000272_100 0.0989766337 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
14 Hb_000029_030 0.1000269245 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
15 Hb_007508_070 0.1005012087 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_002253_070 0.1006654564 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
17 Hb_001195_690 0.1008317557 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
18 Hb_002235_400 0.1016117032 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
19 Hb_159558_030 0.1016877838 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
20 Hb_006569_020 0.1022044562 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]

Gene co-expression network

sample Hb_002681_020 Hb_002681_020 Hb_001776_110 Hb_001776_110 Hb_002681_020--Hb_001776_110 Hb_003052_100 Hb_003052_100 Hb_002681_020--Hb_003052_100 Hb_004812_010 Hb_004812_010 Hb_002681_020--Hb_004812_010 Hb_000665_040 Hb_000665_040 Hb_002681_020--Hb_000665_040 Hb_004310_030 Hb_004310_030 Hb_002681_020--Hb_004310_030 Hb_008554_020 Hb_008554_020 Hb_002681_020--Hb_008554_020 Hb_003540_040 Hb_003540_040 Hb_001776_110--Hb_003540_040 Hb_006569_020 Hb_006569_020 Hb_001776_110--Hb_006569_020 Hb_010436_070 Hb_010436_070 Hb_001776_110--Hb_010436_070 Hb_004662_030 Hb_004662_030 Hb_001776_110--Hb_004662_030 Hb_002097_110 Hb_002097_110 Hb_001776_110--Hb_002097_110 Hb_000029_030 Hb_000029_030 Hb_001776_110--Hb_000029_030 Hb_158092_070 Hb_158092_070 Hb_003052_100--Hb_158092_070 Hb_001195_690 Hb_001195_690 Hb_003052_100--Hb_001195_690 Hb_002078_450 Hb_002078_450 Hb_003052_100--Hb_002078_450 Hb_004657_020 Hb_004657_020 Hb_003052_100--Hb_004657_020 Hb_071736_020 Hb_071736_020 Hb_003052_100--Hb_071736_020 Hb_001671_080 Hb_001671_080 Hb_003052_100--Hb_001671_080 Hb_001584_330 Hb_001584_330 Hb_004812_010--Hb_001584_330 Hb_001138_050 Hb_001138_050 Hb_004812_010--Hb_001138_050 Hb_007508_070 Hb_007508_070 Hb_004812_010--Hb_007508_070 Hb_006922_100 Hb_006922_100 Hb_004812_010--Hb_006922_100 Hb_002685_140 Hb_002685_140 Hb_004812_010--Hb_002685_140 Hb_001377_290 Hb_001377_290 Hb_004812_010--Hb_001377_290 Hb_002411_200 Hb_002411_200 Hb_000665_040--Hb_002411_200 Hb_002007_310 Hb_002007_310 Hb_000665_040--Hb_002007_310 Hb_000091_090 Hb_000091_090 Hb_000665_040--Hb_000091_090 Hb_003151_050 Hb_003151_050 Hb_000665_040--Hb_003151_050 Hb_000567_260 Hb_000567_260 Hb_000665_040--Hb_000567_260 Hb_000665_040--Hb_007508_070 Hb_007254_040 Hb_007254_040 Hb_004310_030--Hb_007254_040 Hb_004310_030--Hb_008554_020 Hb_007894_140 Hb_007894_140 Hb_004310_030--Hb_007894_140 Hb_000638_080 Hb_000638_080 Hb_004310_030--Hb_000638_080 Hb_001135_050 Hb_001135_050 Hb_004310_030--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004310_030--Hb_005539_030 Hb_008554_020--Hb_007254_040 Hb_007317_180 Hb_007317_180 Hb_008554_020--Hb_007317_180 Hb_011310_190 Hb_011310_190 Hb_008554_020--Hb_011310_190 Hb_008554_020--Hb_003052_100 Hb_117134_010 Hb_117134_010 Hb_008554_020--Hb_117134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.401 27.4642 15.8675 37.3089 92.0415 92.2159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
180.817 93.4518 100.639 39.1352 34.2241

CAGE analysis