Hb_002681_040

Information

Type -
Description -
Location Contig2681: 24461-27401
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35460g
description POPTRDRAFT_844954; hypothetical protein
nr
ID XP_012071944.1
description PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
swissprot
ID Q84JC0
description Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana GN=At5g40530 PE=2 SV=1
trembl
ID A0A067LNH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10245 PE=4 SV=1
Gene Ontology
ID GO:0008168
description ribosomal rna-processing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27915: 26406-27258 , PASA_asmbl_27916: 24501-27299
cDNA
(Sanger)
(ID:Location)		 021_N14.ab1: 26406-27258 , 029_C15.ab1: 26406-27258

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_040 0.0 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
2 Hb_001405_050 0.0968372976 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
3 Hb_010449_020 0.0996410479 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
4 Hb_005545_030 0.0999759644 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
5 Hb_000768_050 0.1028436085 - - hypothetical protein RCOM_0845740 [Ricinus communis]
6 Hb_003688_100 0.1054383871 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
7 Hb_000680_150 0.1078347325 - - PREDICTED: protein STU1-like [Jatropha curcas]
8 Hb_001514_020 0.1100862554 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
9 Hb_004046_040 0.113104714 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
10 Hb_004204_030 0.1147854548 - - unknown [Populus trichocarpa]
11 Hb_010883_210 0.1148828295 - - PREDICTED: selenoprotein K [Jatropha curcas]
12 Hb_001386_130 0.118351298 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
13 Hb_002043_180 0.1191721144 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
14 Hb_004137_030 0.1200672753 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000573_070 0.1236699069 - - hypothetical protein JCGZ_14808 [Jatropha curcas]
16 Hb_001269_150 0.1246499508 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
17 Hb_004724_140 0.1248724644 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
18 Hb_143766_090 0.1273897683 - - 60S ribosomal protein L31B [Hevea brasiliensis]
19 Hb_000265_150 0.12933219 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
20 Hb_011794_090 0.1295132474 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]

Gene co-expression network

sample Hb_002681_040 Hb_002681_040 Hb_001405_050 Hb_001405_050 Hb_002681_040--Hb_001405_050 Hb_010449_020 Hb_010449_020 Hb_002681_040--Hb_010449_020 Hb_005545_030 Hb_005545_030 Hb_002681_040--Hb_005545_030 Hb_000768_050 Hb_000768_050 Hb_002681_040--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_002681_040--Hb_003688_100 Hb_000680_150 Hb_000680_150 Hb_002681_040--Hb_000680_150 Hb_143766_090 Hb_143766_090 Hb_001405_050--Hb_143766_090 Hb_001776_090 Hb_001776_090 Hb_001405_050--Hb_001776_090 Hb_019962_030 Hb_019962_030 Hb_001405_050--Hb_019962_030 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_000538_020 Hb_000538_020 Hb_001405_050--Hb_000538_020 Hb_003185_020 Hb_003185_020 Hb_010449_020--Hb_003185_020 Hb_000392_270 Hb_000392_270 Hb_010449_020--Hb_000392_270 Hb_010449_020--Hb_000768_050 Hb_010449_020--Hb_003688_100 Hb_005489_130 Hb_005489_130 Hb_010449_020--Hb_005489_130 Hb_004722_060 Hb_004722_060 Hb_010449_020--Hb_004722_060 Hb_004046_040 Hb_004046_040 Hb_005545_030--Hb_004046_040 Hb_003018_110 Hb_003018_110 Hb_005545_030--Hb_003018_110 Hb_006452_190 Hb_006452_190 Hb_005545_030--Hb_006452_190 Hb_006096_040 Hb_006096_040 Hb_005545_030--Hb_006096_040 Hb_005545_030--Hb_001405_050 Hb_002495_070 Hb_002495_070 Hb_000768_050--Hb_002495_070 Hb_003106_070 Hb_003106_070 Hb_000768_050--Hb_003106_070 Hb_000265_150 Hb_000265_150 Hb_000768_050--Hb_000265_150 Hb_000768_050--Hb_003688_100 Hb_000768_050--Hb_004722_060 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_003688_100--Hb_004722_060 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_003688_100--Hb_005489_130 Hb_001386_130 Hb_001386_130 Hb_000680_150--Hb_001386_130 Hb_000590_090 Hb_000590_090 Hb_000680_150--Hb_000590_090 Hb_007451_030 Hb_007451_030 Hb_000680_150--Hb_007451_030 Hb_000680_150--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_000680_150--Hb_001493_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.2373 11.1049 15.8754 9.59728 45.8553 35.0091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.0185 57.2669 16.0637 9.43866 6.02218

CAGE analysis