Hb_002681_060

Information

Type transcription factor
Description TF Family: NAC
Location Contig2681: 39344-42109
Sequence    

Annotation

kegg
ID rcu:RCOM_1064740
description hypothetical protein
nr
ID XP_012072809.1
description PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
swissprot
ID Q6NQK2
description NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1
trembl
ID R4NG13
description NAC transcription factor 093 OS=Jatropha curcas GN=JCGZ_10243 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27919: 41448-42424 , PASA_asmbl_27921: 39436-40902
cDNA
(Sanger)
(ID:Location)		 046_G01r.ab1: 36089-51076

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_060 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
2 Hb_000407_040 0.08285289 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_000130_380 0.104290329 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
4 Hb_000061_470 0.1077146 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
5 Hb_001477_070 0.1139026783 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000059_340 0.1140266012 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
7 Hb_000010_240 0.1174747227 - - Protein bem46, putative [Ricinus communis]
8 Hb_001083_050 0.1204577839 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
9 Hb_000318_190 0.1304678382 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
10 Hb_009252_100 0.1308265768 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
11 Hb_001247_130 0.1325558827 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
12 Hb_001195_040 0.1329096856 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
13 Hb_004109_040 0.1331284639 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
14 Hb_000261_220 0.1333608192 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
15 Hb_005137_050 0.1355794033 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
16 Hb_002950_100 0.1357727941 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
17 Hb_008103_110 0.1359008165 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002675_260 0.1370699717 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
19 Hb_007982_080 0.1390745697 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
20 Hb_000926_310 0.1413849142 - - uncharacterized protein LOC100500241 [Glycine max]

Gene co-expression network

sample Hb_002681_060 Hb_002681_060 Hb_000407_040 Hb_000407_040 Hb_002681_060--Hb_000407_040 Hb_000130_380 Hb_000130_380 Hb_002681_060--Hb_000130_380 Hb_000061_470 Hb_000061_470 Hb_002681_060--Hb_000061_470 Hb_001477_070 Hb_001477_070 Hb_002681_060--Hb_001477_070 Hb_000059_340 Hb_000059_340 Hb_002681_060--Hb_000059_340 Hb_000010_240 Hb_000010_240 Hb_002681_060--Hb_000010_240 Hb_000407_040--Hb_000010_240 Hb_000407_040--Hb_000059_340 Hb_000407_040--Hb_000061_470 Hb_000407_040--Hb_001477_070 Hb_008103_110 Hb_008103_110 Hb_000407_040--Hb_008103_110 Hb_000661_140 Hb_000661_140 Hb_000130_380--Hb_000661_140 Hb_004109_040 Hb_004109_040 Hb_000130_380--Hb_004109_040 Hb_002639_150 Hb_002639_150 Hb_000130_380--Hb_002639_150 Hb_000085_240 Hb_000085_240 Hb_000130_380--Hb_000085_240 Hb_000710_020 Hb_000710_020 Hb_000130_380--Hb_000710_020 Hb_004586_140 Hb_004586_140 Hb_000061_470--Hb_004586_140 Hb_005137_050 Hb_005137_050 Hb_000061_470--Hb_005137_050 Hb_000179_070 Hb_000179_070 Hb_000061_470--Hb_000179_070 Hb_000878_070 Hb_000878_070 Hb_000061_470--Hb_000878_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_000084_030 Hb_000084_030 Hb_001477_070--Hb_000084_030 Hb_008695_090 Hb_008695_090 Hb_001477_070--Hb_008695_090 Hb_001477_070--Hb_008103_110 Hb_014361_150 Hb_014361_150 Hb_001477_070--Hb_014361_150 Hb_000059_340--Hb_000010_240 Hb_006261_090 Hb_006261_090 Hb_000059_340--Hb_006261_090 Hb_000059_340--Hb_000061_470 Hb_000866_280 Hb_000866_280 Hb_000059_340--Hb_000866_280 Hb_005488_140 Hb_005488_140 Hb_000010_240--Hb_005488_140 Hb_004800_250 Hb_004800_250 Hb_000010_240--Hb_004800_250 Hb_000010_240--Hb_000061_470 Hb_000983_090 Hb_000983_090 Hb_000010_240--Hb_000983_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54566 8.13952 9.99609 2.43645 7.24771 4.92724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.30358 4.10426 6.67167 2.89045 0.960255

CAGE analysis