Hb_002681_070

Information

Type -
Description -
Location Contig2681: 43012-47431
Sequence    

Annotation

kegg
ID rcu:RCOM_1064750
description hypothetical protein
nr
ID XP_012071912.1
description PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
swissprot
ID Q67XL4
description Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1
trembl
ID B9S664
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1064750 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna-binding crs1 domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27919: 41448-42424 , PASA_asmbl_27924: 45633-46398
cDNA
(Sanger)
(ID:Location)		 046_G01r.ab1: 36089-51076

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_070 0.0 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
2 Hb_008785_040 0.0615245872 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
3 Hb_006915_070 0.0703841737 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
4 Hb_001019_190 0.0735686459 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000034_040 0.079929508 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
6 Hb_000819_080 0.0840483991 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_005496_130 0.0855489713 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
8 Hb_002025_200 0.0860777233 - - -
9 Hb_001545_120 0.089572173 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
10 Hb_000856_110 0.0933347187 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
11 Hb_000345_170 0.0955311387 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
12 Hb_005181_110 0.0959891626 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
13 Hb_086639_040 0.097108181 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
14 Hb_002527_030 0.0973946476 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
15 Hb_012799_180 0.0974585242 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
16 Hb_001776_140 0.0983998286 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_000373_280 0.0984351815 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
18 Hb_002876_110 0.0998309919 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001675_180 0.0998745928 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
20 Hb_004994_380 0.1031173338 - - hypothetical protein JCGZ_14410 [Jatropha curcas]

Gene co-expression network

sample Hb_002681_070 Hb_002681_070 Hb_008785_040 Hb_008785_040 Hb_002681_070--Hb_008785_040 Hb_006915_070 Hb_006915_070 Hb_002681_070--Hb_006915_070 Hb_001019_190 Hb_001019_190 Hb_002681_070--Hb_001019_190 Hb_000034_040 Hb_000034_040 Hb_002681_070--Hb_000034_040 Hb_000819_080 Hb_000819_080 Hb_002681_070--Hb_000819_080 Hb_005496_130 Hb_005496_130 Hb_002681_070--Hb_005496_130 Hb_008785_040--Hb_005496_130 Hb_008785_040--Hb_006915_070 Hb_002154_100 Hb_002154_100 Hb_008785_040--Hb_002154_100 Hb_004100_080 Hb_004100_080 Hb_008785_040--Hb_004100_080 Hb_000856_110 Hb_000856_110 Hb_008785_040--Hb_000856_110 Hb_006915_070--Hb_000034_040 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_006915_070--Hb_000856_110 Hb_001019_190--Hb_000819_080 Hb_024570_010 Hb_024570_010 Hb_001019_190--Hb_024570_010 Hb_000739_310 Hb_000739_310 Hb_001019_190--Hb_000739_310 Hb_000173_290 Hb_000173_290 Hb_001019_190--Hb_000173_290 Hb_000796_220 Hb_000796_220 Hb_001019_190--Hb_000796_220 Hb_015884_030 Hb_015884_030 Hb_000034_040--Hb_015884_030 Hb_012799_030 Hb_012799_030 Hb_000034_040--Hb_012799_030 Hb_003938_080 Hb_003938_080 Hb_000034_040--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_000034_040--Hb_009411_010 Hb_000302_180 Hb_000302_180 Hb_000819_080--Hb_000302_180 Hb_003939_050 Hb_003939_050 Hb_000819_080--Hb_003939_050 Hb_030736_100 Hb_030736_100 Hb_000819_080--Hb_030736_100 Hb_004155_010 Hb_004155_010 Hb_000819_080--Hb_004155_010 Hb_008554_130 Hb_008554_130 Hb_005496_130--Hb_008554_130 Hb_000165_250 Hb_000165_250 Hb_005496_130--Hb_000165_250 Hb_000291_050 Hb_000291_050 Hb_005496_130--Hb_000291_050 Hb_009767_110 Hb_009767_110 Hb_005496_130--Hb_009767_110 Hb_002725_120 Hb_002725_120 Hb_005496_130--Hb_002725_120 Hb_000029_050 Hb_000029_050 Hb_005496_130--Hb_000029_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89241 2.79814 2.37808 1.89869 7.69801 7.30685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46555 5.78273 5.51298 3.5572 7.14753

CAGE analysis