Hb_002681_080

Information

Type -
Description -
Location Contig2681: 50523-53480
Sequence    

Annotation

kegg
ID rcu:RCOM_1064760
description acetylglucosaminyltransferase, putative
nr
ID XP_012071895.1
description PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
swissprot
ID Q02527
description Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2
trembl
ID A0A067LD42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10241 PE=4 SV=1
Gene Ontology
ID GO:0016020
description beta- -n-acetylglucosaminyltransferase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27917: 36089-53418
cDNA
(Sanger)
(ID:Location)		 046_G01.ab1: 51885-53412

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_080 0.0 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
2 Hb_000521_090 0.1178221365 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
3 Hb_010757_030 0.1217966124 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_007002_010 0.1225852012 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
5 Hb_000599_230 0.1235907124 - - -
6 Hb_003077_130 0.127470955 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
7 Hb_000352_220 0.1283398509 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
8 Hb_024714_080 0.1330147005 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
9 Hb_000495_080 0.1334639883 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
10 Hb_005375_110 0.1353363076 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
11 Hb_003878_080 0.1354553934 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
12 Hb_000069_490 0.1357217861 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004735_020 0.1360716872 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
14 Hb_007933_030 0.1363991001 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
15 Hb_016760_010 0.1372438307 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_003884_040 0.1388586012 - - putative gag-pol polyprotein [Oryza sativa Japonica Group]
17 Hb_003427_080 0.1490019332 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
18 Hb_163145_030 0.1504079445 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
19 Hb_000529_140 0.1506199713 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002671_130 0.1509508877 - - GTP-binding protein typa/bipa, putative [Ricinus communis]

Gene co-expression network

sample Hb_002681_080 Hb_002681_080 Hb_000521_090 Hb_000521_090 Hb_002681_080--Hb_000521_090 Hb_010757_030 Hb_010757_030 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_000599_230 Hb_000599_230 Hb_002681_080--Hb_000599_230 Hb_003077_130 Hb_003077_130 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220 Hb_000117_030 Hb_000117_030 Hb_000521_090--Hb_000117_030 Hb_004735_020 Hb_004735_020 Hb_000521_090--Hb_004735_020 Hb_007933_030 Hb_007933_030 Hb_000521_090--Hb_007933_030 Hb_000062_400 Hb_000062_400 Hb_000521_090--Hb_000062_400 Hb_005375_110 Hb_005375_110 Hb_000521_090--Hb_005375_110 Hb_000069_490 Hb_000069_490 Hb_010757_030--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_010757_030--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_010757_030--Hb_028707_110 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010 Hb_007002_010--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_007002_010--Hb_000890_110 Hb_000495_080 Hb_000495_080 Hb_007002_010--Hb_000495_080 Hb_000683_080 Hb_000683_080 Hb_007002_010--Hb_000683_080 Hb_000023_210 Hb_000023_210 Hb_007002_010--Hb_000023_210 Hb_011053_020 Hb_011053_020 Hb_007002_010--Hb_011053_020 Hb_000599_230--Hb_004735_020 Hb_002740_190 Hb_002740_190 Hb_000599_230--Hb_002740_190 Hb_000599_230--Hb_010757_030 Hb_000479_170 Hb_000479_170 Hb_000599_230--Hb_000479_170 Hb_025477_050 Hb_025477_050 Hb_000599_230--Hb_025477_050 Hb_024714_080 Hb_024714_080 Hb_003077_130--Hb_024714_080 Hb_003077_130--Hb_000069_490 Hb_000997_140 Hb_000997_140 Hb_003077_130--Hb_000997_140 Hb_004785_070 Hb_004785_070 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_028707_110 Hb_003077_130--Hb_010757_030 Hb_000352_220--Hb_000495_080 Hb_003226_190 Hb_003226_190 Hb_000352_220--Hb_003226_190 Hb_000300_020 Hb_000300_020 Hb_000352_220--Hb_000300_020 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92861 2.36453 2.87103 6.06863 2.41095 3.05991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73058 0.925241 2.08645 2.61106 21.814

CAGE analysis