Hb_002681_110

Information

Type -
Description -
Location Contig2681: 82343-88182
Sequence    

Annotation

kegg
ID cit:102610957
description SAGA-associated factor 29-like
nr
ID XP_012071805.1
description PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
swissprot
ID Q9DA08
description SAGA-associated factor 29 homolog OS=Mus musculus GN=Ccdc101 PE=2 SV=1
trembl
ID A0A067LNG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10235 PE=4 SV=1
Gene Ontology
ID GO:0005634
description s tudor-like domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27928: 82371-87973 , PASA_asmbl_27929: 86817-87306 , PASA_asmbl_27930: 86862-88065
cDNA
(Sanger)
(ID:Location)		 003_N22.ab1: 82371-86885 , 014_C20.ab1: 82371-86867

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_110 0.0 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
2 Hb_000029_030 0.0861694906 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
3 Hb_157022_020 0.0866023302 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
4 Hb_000115_060 0.0879863659 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
5 Hb_071736_020 0.0882420705 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
6 Hb_000317_030 0.0920495862 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
7 Hb_007919_050 0.0936349386 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
8 Hb_010710_030 0.0971550311 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
9 Hb_003052_100 0.0981501263 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_002527_070 0.0987921529 - - axonemal dynein light chain, putative [Ricinus communis]
11 Hb_002368_050 0.0988064467 - - conserved hypothetical protein [Ricinus communis]
12 Hb_022250_040 0.098917079 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
13 Hb_000061_320 0.0992203864 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
14 Hb_002539_080 0.0998216361 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
15 Hb_003408_020 0.1015407774 - - hypothetical protein RCOM_0453040 [Ricinus communis]
16 Hb_001691_210 0.1015680904 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
17 Hb_001008_060 0.1029694341 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
18 Hb_002681_020 0.1039198327 - - aldose 1-epimerase, putative [Ricinus communis]
19 Hb_008066_010 0.1045650481 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
20 Hb_001427_120 0.1057380996 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]

Gene co-expression network

sample Hb_002681_110 Hb_002681_110 Hb_000029_030 Hb_000029_030 Hb_002681_110--Hb_000029_030 Hb_157022_020 Hb_157022_020 Hb_002681_110--Hb_157022_020 Hb_000115_060 Hb_000115_060 Hb_002681_110--Hb_000115_060 Hb_071736_020 Hb_071736_020 Hb_002681_110--Hb_071736_020 Hb_000317_030 Hb_000317_030 Hb_002681_110--Hb_000317_030 Hb_007919_050 Hb_007919_050 Hb_002681_110--Hb_007919_050 Hb_002368_050 Hb_002368_050 Hb_000029_030--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_000029_030--Hb_006693_030 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_011224_080 Hb_011224_080 Hb_000029_030--Hb_011224_080 Hb_000922_270 Hb_000922_270 Hb_157022_020--Hb_000922_270 Hb_003408_020 Hb_003408_020 Hb_157022_020--Hb_003408_020 Hb_000174_070 Hb_000174_070 Hb_157022_020--Hb_000174_070 Hb_002735_060 Hb_002735_060 Hb_157022_020--Hb_002735_060 Hb_092100_020 Hb_092100_020 Hb_157022_020--Hb_092100_020 Hb_010710_030 Hb_010710_030 Hb_000115_060--Hb_010710_030 Hb_008066_010 Hb_008066_010 Hb_000115_060--Hb_008066_010 Hb_000840_210 Hb_000840_210 Hb_000115_060--Hb_000840_210 Hb_001329_300 Hb_001329_300 Hb_000115_060--Hb_001329_300 Hb_183086_060 Hb_183086_060 Hb_000115_060--Hb_183086_060 Hb_002078_450 Hb_002078_450 Hb_071736_020--Hb_002078_450 Hb_001718_100 Hb_001718_100 Hb_071736_020--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_071736_020--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_071736_020--Hb_001427_120 Hb_071736_020--Hb_000975_290 Hb_021650_030 Hb_021650_030 Hb_071736_020--Hb_021650_030 Hb_000576_010 Hb_000576_010 Hb_000317_030--Hb_000576_010 Hb_004994_170 Hb_004994_170 Hb_000317_030--Hb_004994_170 Hb_001671_080 Hb_001671_080 Hb_000317_030--Hb_001671_080 Hb_004223_130 Hb_004223_130 Hb_000317_030--Hb_004223_130 Hb_002527_070 Hb_002527_070 Hb_000317_030--Hb_002527_070 Hb_001439_120 Hb_001439_120 Hb_007919_050--Hb_001439_120 Hb_006569_020 Hb_006569_020 Hb_007919_050--Hb_006569_020 Hb_159558_030 Hb_159558_030 Hb_007919_050--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_007919_050--Hb_000500_130 Hb_158092_070 Hb_158092_070 Hb_007919_050--Hb_158092_070 Hb_022250_040 Hb_022250_040 Hb_007919_050--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.6292 3.13685 6.33998 11.2404 22.3182 22.0847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.1949 24.5627 34.2367 11.7363 4.02364

CAGE analysis