Hb_002681_140

Information

Type -
Description -
Location Contig2681: 111158-113251
Sequence    

Annotation

kegg
ID rcu:RCOM_1065240
description hypothetical protein
nr
ID XP_012071779.1
description PREDICTED: surfeit locus protein 2 [Jatropha curcas]
swissprot
ID P09926
description Surfeit locus protein 2 OS=Mus musculus GN=Surf2 PE=3 SV=1
trembl
ID B9S673
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1065240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27934: 112763-113222 , PASA_asmbl_27935: 111233-112833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_140 0.0 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
2 Hb_002391_110 0.070778806 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
3 Hb_000176_140 0.0735003057 - - PREDICTED: bystin [Jatropha curcas]
4 Hb_000284_200 0.0768716271 - - -
5 Hb_002044_090 0.0785042843 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
6 Hb_127979_010 0.0793768354 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
7 Hb_011496_010 0.0812463005 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
8 Hb_066807_010 0.0860221431 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
9 Hb_003638_140 0.0860845829 - - protein binding protein, putative [Ricinus communis]
10 Hb_001433_170 0.0870812683 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
11 Hb_006637_060 0.0886564881 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
12 Hb_003352_050 0.0888878129 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
13 Hb_004502_030 0.0910072145 - - unknown [Populus trichocarpa]
14 Hb_000847_070 0.0913827268 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
15 Hb_026048_090 0.0918939639 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000179_250 0.0944002001 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
17 Hb_002377_040 0.0947982275 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_001804_060 0.0964093687 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
19 Hb_000365_360 0.0974291983 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_001369_060 0.0990602037 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]

Gene co-expression network

sample Hb_002681_140 Hb_002681_140 Hb_002391_110 Hb_002391_110 Hb_002681_140--Hb_002391_110 Hb_000176_140 Hb_000176_140 Hb_002681_140--Hb_000176_140 Hb_000284_200 Hb_000284_200 Hb_002681_140--Hb_000284_200 Hb_002044_090 Hb_002044_090 Hb_002681_140--Hb_002044_090 Hb_127979_010 Hb_127979_010 Hb_002681_140--Hb_127979_010 Hb_011496_010 Hb_011496_010 Hb_002681_140--Hb_011496_010 Hb_000599_120 Hb_000599_120 Hb_002391_110--Hb_000599_120 Hb_002391_110--Hb_127979_010 Hb_000085_340 Hb_000085_340 Hb_002391_110--Hb_000085_340 Hb_026048_090 Hb_026048_090 Hb_002391_110--Hb_026048_090 Hb_002391_110--Hb_000176_140 Hb_000176_140--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_000176_140--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_000176_140--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030 Hb_000015_010 Hb_000015_010 Hb_000284_200--Hb_000015_010 Hb_000847_070 Hb_000847_070 Hb_000284_200--Hb_000847_070 Hb_004502_030 Hb_004502_030 Hb_000284_200--Hb_004502_030 Hb_006637_060 Hb_006637_060 Hb_000284_200--Hb_006637_060 Hb_001514_200 Hb_001514_200 Hb_000284_200--Hb_001514_200 Hb_000062_230 Hb_000062_230 Hb_002044_090--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002044_090--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_002044_090--Hb_002377_040 Hb_002044_090--Hb_000179_250 Hb_003352_050 Hb_003352_050 Hb_002044_090--Hb_003352_050 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_000057_060 Hb_000057_060 Hb_127979_010--Hb_000057_060 Hb_127979_010--Hb_026048_090 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030 Hb_002169_010 Hb_002169_010 Hb_011496_010--Hb_002169_010 Hb_029281_010 Hb_029281_010 Hb_011496_010--Hb_029281_010 Hb_000462_150 Hb_000462_150 Hb_011496_010--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_001936_050 Hb_001936_050 Hb_011496_010--Hb_001936_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.71 37.1526 22.8901 13.1775 214.114 275.228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
129.854 110.99 104.819 35.6604 17.4067

CAGE analysis