Hb_002681_170

Information

Type -
Description -
Location Contig2681: 121264-125645
Sequence    

Annotation

kegg
ID rcu:RCOM_1065260
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_012071744.1
description PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
swissprot
ID Q8VZV7
description Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=2 SV=1
trembl
ID A0A067LD32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10231 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27936: 121386-125548 , PASA_asmbl_27937: 124583-125441 , PASA_asmbl_27938: 124590-125348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_170 0.0 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
2 Hb_002249_120 0.0746546301 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_000031_280 0.0818663794 - - -
4 Hb_002092_100 0.086312491 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
5 Hb_008556_030 0.088310888 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
6 Hb_002805_060 0.0899931049 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
7 Hb_000809_210 0.0929001266 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
8 Hb_002307_350 0.095364486 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_002093_030 0.0964719314 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
10 Hb_000031_290 0.0969829956 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
11 Hb_005408_020 0.0982330356 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001163_120 0.1026957321 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_011609_170 0.1029307405 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
14 Hb_011915_010 0.1037782575 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
15 Hb_000025_650 0.105175679 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
16 Hb_000735_100 0.1081817733 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
17 Hb_001396_280 0.1082992372 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
18 Hb_002749_110 0.1093433479 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
19 Hb_003126_100 0.1096007224 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
20 Hb_000002_490 0.1102175575 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]

Gene co-expression network

sample Hb_002681_170 Hb_002681_170 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_002092_100 Hb_002092_100 Hb_002681_170--Hb_002092_100 Hb_008556_030 Hb_008556_030 Hb_002681_170--Hb_008556_030 Hb_002805_060 Hb_002805_060 Hb_002681_170--Hb_002805_060 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_002307_350 Hb_002307_350 Hb_002249_120--Hb_002307_350 Hb_017895_020 Hb_017895_020 Hb_002249_120--Hb_017895_020 Hb_003436_050 Hb_003436_050 Hb_002249_120--Hb_003436_050 Hb_005408_020 Hb_005408_020 Hb_002249_120--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_002249_120--Hb_001900_120 Hb_000031_280--Hb_008556_030 Hb_001163_120 Hb_001163_120 Hb_000031_280--Hb_001163_120 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_002805_060 Hb_027380_030 Hb_027380_030 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002836_140 Hb_002836_140 Hb_008556_030--Hb_002836_140 Hb_008556_030--Hb_001418_040 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030 Hb_002805_060--Hb_027380_030 Hb_000599_170 Hb_000599_170 Hb_002805_060--Hb_000599_170 Hb_003894_040 Hb_003894_040 Hb_002805_060--Hb_003894_040 Hb_002896_060 Hb_002896_060 Hb_002805_060--Hb_002896_060 Hb_011915_010 Hb_011915_010 Hb_000809_210--Hb_011915_010 Hb_000809_210--Hb_000031_290 Hb_000265_220 Hb_000265_220 Hb_000809_210--Hb_000265_220 Hb_000809_210--Hb_002093_030 Hb_000809_210--Hb_002092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0524 10.2229 18.3351 13.8182 26.6716 23.2607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.53378 4.37298 4.23492 6.84813 12.7268

CAGE analysis