Hb_002684_020

Information

Type -
Description -
Location Contig2684: 29163-38052
Sequence    

Annotation

kegg
ID rcu:RCOM_0868210
description ATP-dependent clp protease ATP-binding subunit clpx, putative
nr
ID XP_002519956.1
description ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
swissprot
ID Q92QQ2
description ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium meliloti (strain 1021) GN=clpX PE=3 SV=1
trembl
ID B9S1U1
description ATP-dependent clp protease ATP-binding subunit clpx, putative OS=Ricinus communis GN=RCOM_0868210 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atp-dependent clp protease atp-binding subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27942: 36681-36809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002684_020 0.0 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
2 Hb_004324_360 0.0588189294 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
3 Hb_006970_020 0.0650207447 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
4 Hb_021596_020 0.0684904179 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
5 Hb_000788_030 0.0722668568 - - PREDICTED: dynamin-2A [Jatropha curcas]
6 Hb_000815_300 0.0730575603 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_012438_030 0.0759805978 - - PREDICTED: protein sym-1 [Jatropha curcas]
8 Hb_000579_080 0.0762891411 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
9 Hb_001504_010 0.0770367937 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
10 Hb_001703_040 0.0774805641 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
11 Hb_002675_250 0.0802861171 - - aspartate aminotransferase, putative [Ricinus communis]
12 Hb_000078_140 0.0805109471 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
13 Hb_000476_060 0.080624581 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
14 Hb_000453_030 0.0820978301 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
15 Hb_012633_050 0.0829488058 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000748_090 0.0835075137 - - glucose inhibited division protein A, putative [Ricinus communis]
17 Hb_000101_390 0.0836620977 - - PREDICTED: mucin-5B [Jatropha curcas]
18 Hb_002552_040 0.0850445197 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
19 Hb_087313_010 0.0853471643 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000862_100 0.0854084432 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002684_020 Hb_002684_020 Hb_004324_360 Hb_004324_360 Hb_002684_020--Hb_004324_360 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_004324_360--Hb_000788_030 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_006970_020--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_000078_140 Hb_000078_140 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_001504_010 Hb_001504_010 Hb_021596_020--Hb_001504_010 Hb_016448_010 Hb_016448_010 Hb_021596_020--Hb_016448_010 Hb_000748_090 Hb_000748_090 Hb_021596_020--Hb_000748_090 Hb_006438_020 Hb_006438_020 Hb_021596_020--Hb_006438_020 Hb_012633_050 Hb_012633_050 Hb_021596_020--Hb_012633_050 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_012438_030--Hb_087313_010 Hb_012438_030--Hb_001703_040 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78097 6.13617 13.9445 9.5504 3.83222 4.64359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68238 3.51962 5.55717 7.41927 11.8302

CAGE analysis