Hb_002685_010

Information

Type -
Description -
Location Contig2685: 12171-12986
Sequence    

Annotation

kegg
ID rcu:RCOM_1674160
description hypothetical protein
nr
ID XP_012091616.1
description PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
swissprot
ID Q5M750
description VQ motif-containing protein 4 OS=Arabidopsis thaliana GN=VQ4 PE=1 SV=1
trembl
ID A0A067JB38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21453 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27945: 12061-13322
cDNA
(Sanger)
(ID:Location)		 023_N01.ab1: 12165-12766 , 035_L22.ab1: 12061-12822 , 037_E22.ab1: 12165-12912

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_010 0.0 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
2 Hb_126643_020 0.0683013983 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
3 Hb_000203_160 0.0707228286 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
4 Hb_002085_110 0.0827936255 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
5 Hb_000139_410 0.0833452293 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
6 Hb_000127_130 0.0881697319 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
7 Hb_005699_070 0.0917497933 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
8 Hb_002027_260 0.0923917795 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
9 Hb_004837_040 0.0973391701 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
10 Hb_006332_020 0.099684979 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
11 Hb_000567_210 0.1003967289 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
12 Hb_001595_030 0.1005282179 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
13 Hb_001277_270 0.1012976302 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
14 Hb_005348_140 0.1021352604 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
15 Hb_010381_070 0.1025690252 - - PREDICTED: protein STU1-like [Jatropha curcas]
16 Hb_001623_420 0.1032008475 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_011218_040 0.1037954968 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
18 Hb_001584_330 0.1038692871 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
19 Hb_005000_210 0.103901682 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
20 Hb_002496_030 0.1040903711 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002685_010 Hb_002685_010 Hb_126643_020 Hb_126643_020 Hb_002685_010--Hb_126643_020 Hb_000203_160 Hb_000203_160 Hb_002685_010--Hb_000203_160 Hb_002085_110 Hb_002085_110 Hb_002685_010--Hb_002085_110 Hb_000139_410 Hb_000139_410 Hb_002685_010--Hb_000139_410 Hb_000127_130 Hb_000127_130 Hb_002685_010--Hb_000127_130 Hb_005699_070 Hb_005699_070 Hb_002685_010--Hb_005699_070 Hb_126643_020--Hb_000203_160 Hb_126643_020--Hb_002085_110 Hb_002518_140 Hb_002518_140 Hb_126643_020--Hb_002518_140 Hb_126643_020--Hb_005699_070 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010 Hb_004837_040 Hb_004837_040 Hb_000203_160--Hb_004837_040 Hb_004907_110 Hb_004907_110 Hb_000203_160--Hb_004907_110 Hb_000554_020 Hb_000554_020 Hb_000203_160--Hb_000554_020 Hb_002496_030 Hb_002496_030 Hb_000203_160--Hb_002496_030 Hb_002150_080 Hb_002150_080 Hb_002085_110--Hb_002150_080 Hb_001277_270 Hb_001277_270 Hb_002085_110--Hb_001277_270 Hb_002685_170 Hb_002685_170 Hb_002085_110--Hb_002685_170 Hb_002375_020 Hb_002375_020 Hb_002085_110--Hb_002375_020 Hb_010381_070 Hb_010381_070 Hb_000139_410--Hb_010381_070 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_001584_330 Hb_001584_330 Hb_000139_410--Hb_001584_330 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_000139_410--Hb_001623_420 Hb_000139_410--Hb_002150_080 Hb_000031_060 Hb_000031_060 Hb_000127_130--Hb_000031_060 Hb_002256_030 Hb_002256_030 Hb_000127_130--Hb_002256_030 Hb_109092_010 Hb_109092_010 Hb_000127_130--Hb_109092_010 Hb_000127_130--Hb_000139_410 Hb_001488_070 Hb_001488_070 Hb_000127_130--Hb_001488_070 Hb_002216_040 Hb_002216_040 Hb_005699_070--Hb_002216_040 Hb_000503_050 Hb_000503_050 Hb_005699_070--Hb_000503_050 Hb_002105_040 Hb_002105_040 Hb_005699_070--Hb_002105_040 Hb_005618_170 Hb_005618_170 Hb_005699_070--Hb_005618_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.356 58.9635 27.4375 32.5007 63.043 62.0457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.4233 78.4197 85.2456 50.9985 26.7207

CAGE analysis