Hb_002685_020

Information

Type -
Description -
Location Contig2685: 12180-12884
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_020 0.0 - - -
2 Hb_026527_030 0.0823615943 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
3 Hb_002216_040 0.085920964 - - PREDICTED: protein PRD1 [Jatropha curcas]
4 Hb_019253_020 0.0919974051 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
5 Hb_004678_050 0.095247136 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
6 Hb_000300_640 0.0955386561 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
7 Hb_000116_440 0.0965064905 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
8 Hb_009954_040 0.1016306424 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
9 Hb_032717_080 0.1039499037 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
10 Hb_003020_230 0.1041962022 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
11 Hb_000613_140 0.1048704948 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
12 Hb_001138_050 0.1062394694 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
13 Hb_004657_020 0.1081198621 - - rer1 protein, putative [Ricinus communis]
14 Hb_000025_120 0.1082167753 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
15 Hb_012053_070 0.1085174106 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
16 Hb_000834_270 0.1090635382 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
17 Hb_005329_020 0.1094173176 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
18 Hb_002030_040 0.1099696688 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
19 Hb_000103_090 0.1099875244 - - PREDICTED: protein RDM1 [Jatropha curcas]
20 Hb_001366_190 0.1104305667 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]

Gene co-expression network

sample Hb_002685_020 Hb_002685_020 Hb_026527_030 Hb_026527_030 Hb_002685_020--Hb_026527_030 Hb_002216_040 Hb_002216_040 Hb_002685_020--Hb_002216_040 Hb_019253_020 Hb_019253_020 Hb_002685_020--Hb_019253_020 Hb_004678_050 Hb_004678_050 Hb_002685_020--Hb_004678_050 Hb_000300_640 Hb_000300_640 Hb_002685_020--Hb_000300_640 Hb_000116_440 Hb_000116_440 Hb_002685_020--Hb_000116_440 Hb_000331_080 Hb_000331_080 Hb_026527_030--Hb_000331_080 Hb_024185_020 Hb_024185_020 Hb_026527_030--Hb_024185_020 Hb_002253_070 Hb_002253_070 Hb_026527_030--Hb_002253_070 Hb_009954_040 Hb_009954_040 Hb_026527_030--Hb_009954_040 Hb_004994_100 Hb_004994_100 Hb_026527_030--Hb_004994_100 Hb_000503_050 Hb_000503_050 Hb_002216_040--Hb_000503_050 Hb_005699_070 Hb_005699_070 Hb_002216_040--Hb_005699_070 Hb_000834_270 Hb_000834_270 Hb_002216_040--Hb_000834_270 Hb_000010_470 Hb_000010_470 Hb_002216_040--Hb_000010_470 Hb_002216_040--Hb_004678_050 Hb_005357_030 Hb_005357_030 Hb_019253_020--Hb_005357_030 Hb_001138_050 Hb_001138_050 Hb_019253_020--Hb_001138_050 Hb_000656_400 Hb_000656_400 Hb_019253_020--Hb_000656_400 Hb_000251_130 Hb_000251_130 Hb_019253_020--Hb_000251_130 Hb_000613_140 Hb_000613_140 Hb_019253_020--Hb_000613_140 Hb_006332_020 Hb_006332_020 Hb_019253_020--Hb_006332_020 Hb_001360_050 Hb_001360_050 Hb_004678_050--Hb_001360_050 Hb_000025_120 Hb_000025_120 Hb_004678_050--Hb_000025_120 Hb_012675_060 Hb_012675_060 Hb_004678_050--Hb_012675_060 Hb_004678_050--Hb_000834_270 Hb_020419_010 Hb_020419_010 Hb_004678_050--Hb_020419_010 Hb_003020_230 Hb_003020_230 Hb_004678_050--Hb_003020_230 Hb_000062_550 Hb_000062_550 Hb_000300_640--Hb_000062_550 Hb_001366_190 Hb_001366_190 Hb_000300_640--Hb_001366_190 Hb_000802_080 Hb_000802_080 Hb_000300_640--Hb_000802_080 Hb_000705_210 Hb_000705_210 Hb_000300_640--Hb_000705_210 Hb_000700_110 Hb_000700_110 Hb_000300_640--Hb_000700_110 Hb_000220_220 Hb_000220_220 Hb_000116_440--Hb_000220_220 Hb_000103_090 Hb_000103_090 Hb_000116_440--Hb_000103_090 Hb_002893_080 Hb_002893_080 Hb_000116_440--Hb_002893_080 Hb_000003_080 Hb_000003_080 Hb_000116_440--Hb_000003_080 Hb_002890_140 Hb_002890_140 Hb_000116_440--Hb_002890_140 Hb_032717_080 Hb_032717_080 Hb_000116_440--Hb_032717_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9263 5.08399 1.9505 6.75033 9.49914 8.25226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4881 15.791 11.0026 9.20156 4.89442

CAGE analysis