Hb_002685_030

Information

Type -
Description -
Location Contig2685: 34032-39782
Sequence    

Annotation

kegg
ID rcu:RCOM_1674150
description smg-7, putative
nr
ID XP_012091617.1
description PREDICTED: protein SMG7L [Jatropha curcas]
swissprot
ID Q9FZ99
description Protein SMG7L OS=Arabidopsis thaliana GN=SMG7L PE=2 SV=1
trembl
ID B9RBC7
description Smg-7, putative OS=Ricinus communis GN=RCOM_1674150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27947: 35775-39740 , PASA_asmbl_27948: 35775-39754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_030 0.0 - - PREDICTED: protein SMG7L [Jatropha curcas]
2 Hb_000950_040 0.1014259129 - - cation-transporting atpase plant, putative [Ricinus communis]
3 Hb_002740_040 0.1024084877 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
4 Hb_001522_040 0.1056368257 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_000732_230 0.1070377123 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
6 Hb_052117_010 0.1180585934 - - kinase, putative [Ricinus communis]
7 Hb_014720_030 0.1188611263 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
8 Hb_001898_020 0.1244005024 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
9 Hb_000363_180 0.1251356109 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
10 Hb_000997_340 0.1272454962 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000220_080 0.1298859896 - - kinase, putative [Ricinus communis]
12 Hb_009745_010 0.1307297884 - - cellulose synthase-like protein [Populus tomentosa]
13 Hb_003050_150 0.1351832989 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
14 Hb_000216_020 0.1365473415 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
15 Hb_000000_110 0.1366459402 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
16 Hb_000270_110 0.138580005 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
17 Hb_001832_210 0.1399695953 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
18 Hb_004162_120 0.1404952857 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
19 Hb_000072_020 0.1425854968 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
20 Hb_000362_090 0.1434891692 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002685_030 Hb_002685_030 Hb_000950_040 Hb_000950_040 Hb_002685_030--Hb_000950_040 Hb_002740_040 Hb_002740_040 Hb_002685_030--Hb_002740_040 Hb_001522_040 Hb_001522_040 Hb_002685_030--Hb_001522_040 Hb_000732_230 Hb_000732_230 Hb_002685_030--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_002685_030--Hb_052117_010 Hb_014720_030 Hb_014720_030 Hb_002685_030--Hb_014720_030 Hb_000950_040--Hb_000732_230 Hb_000950_040--Hb_052117_010 Hb_000227_320 Hb_000227_320 Hb_000950_040--Hb_000227_320 Hb_000196_010 Hb_000196_010 Hb_000950_040--Hb_000196_010 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_115513_040 Hb_115513_040 Hb_000950_040--Hb_115513_040 Hb_087587_010 Hb_087587_010 Hb_002740_040--Hb_087587_010 Hb_002740_040--Hb_014720_030 Hb_000470_110 Hb_000470_110 Hb_002740_040--Hb_000470_110 Hb_002740_040--Hb_000950_040 Hb_114943_020 Hb_114943_020 Hb_002740_040--Hb_114943_020 Hb_001522_040--Hb_052117_010 Hb_000100_210 Hb_000100_210 Hb_001522_040--Hb_000100_210 Hb_009745_010 Hb_009745_010 Hb_001522_040--Hb_009745_010 Hb_001898_020 Hb_001898_020 Hb_001522_040--Hb_001898_020 Hb_029748_020 Hb_029748_020 Hb_001522_040--Hb_029748_020 Hb_000732_230--Hb_115513_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_001951_240 Hb_001951_240 Hb_000732_230--Hb_001951_240 Hb_000732_230--Hb_000227_320 Hb_003050_150 Hb_003050_150 Hb_000732_230--Hb_003050_150 Hb_052117_010--Hb_001898_020 Hb_052117_010--Hb_009745_010 Hb_000997_340 Hb_000997_340 Hb_052117_010--Hb_000997_340 Hb_052117_010--Hb_000196_010 Hb_004875_010 Hb_004875_010 Hb_014720_030--Hb_004875_010 Hb_001226_110 Hb_001226_110 Hb_014720_030--Hb_001226_110 Hb_001269_050 Hb_001269_050 Hb_014720_030--Hb_001269_050 Hb_122273_020 Hb_122273_020 Hb_014720_030--Hb_122273_020 Hb_001103_090 Hb_001103_090 Hb_014720_030--Hb_001103_090 Hb_005000_090 Hb_005000_090 Hb_014720_030--Hb_005000_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.64937 18.2367 7.95863 15.0803 3.27381 5.79109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.939664 0.379464 1.02607 10.1567 6.51433

CAGE analysis