Hb_002685_100

Information

Type -
Description -
Location Contig2685: 115305-115607
Sequence    

Annotation

kegg
ID gmx:547450
description SRC1; src1 protein
nr
ID ABO70349.1
description low temperature inducible SLTI66 [Glycine max]
swissprot
ID -
description -
trembl
ID B8LFE2
description Low temperature inducible SLTI66 OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0050896
description probable zinc transporter protein ddb_g0282067

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27955: 114952-115726
cDNA
(Sanger)
(ID:Location)		 001_E04.ab1: 115004-115726 , 001_H17.ab1: 115006-115665 , 001_K24.ab1: 115006-115665 , 002_O23.ab1: 115006-115665 , 005_C11.ab1: 114952-115520 , 006_C18.ab1: 115006-115665 , 006_H16.ab1: 115007-115665 , 008_B06.ab1: 115012-115666 , 008_F16.ab1: 115149-115665 , 008_J09.ab1: 115007-115668 , 008_L24.ab1: 115013-115672 , 009_M24.ab1: 115006-115665 , 010_E20.ab1: 115007-115665 , 013_I15.ab1: 115019-115665 , 017_L21.ab1: 115006-115726 , 018_J06.ab1: 115006-115665 , 019_J14.ab1: 115013-115666 , 020_H06.ab1: 115006-115491 , 020_H13.ab1: 115008-115667 , 020_K01.ab1: 115006-115665 , 024_G24.ab1: 115006-115665 , 027_L10.ab1: 115013-115668 , 027_O03.ab1: 114952-115520 , 030_K16.ab1: 115006-115491 , 033_I09.ab1: 115007-115665 , 035_H23.ab1: 115006-115665 , 039_B01.ab1: 115007-115665 , 042_F12.ab1: 115007-115665 , 044_K10.ab1: 115016-115665 , 046_H06.ab1: 114952-115520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_100 0.0 - - low temperature inducible SLTI66 [Glycine max]
2 Hb_002304_190 0.0618147589 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
3 Hb_000336_280 0.0711543958 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
4 Hb_001832_110 0.0713952765 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
5 Hb_000017_320 0.1111478018 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
6 Hb_001358_120 0.1122013764 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
7 Hb_005333_210 0.1167482854 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
8 Hb_009486_120 0.1171354467 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
9 Hb_001439_040 0.117329273 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
10 Hb_000836_260 0.1261197626 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_033312_050 0.1270674247 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
12 Hb_000215_130 0.1277928565 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
13 Hb_001226_100 0.1306382072 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_000753_180 0.1337270694 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
15 Hb_022092_050 0.1342417867 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
16 Hb_123560_020 0.1343050715 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
17 Hb_001300_140 0.1394387443 - - -
18 Hb_000696_250 0.1396849302 - - PREDICTED: patellin-6 [Jatropha curcas]
19 Hb_006573_260 0.1417205304 - - -
20 Hb_000018_120 0.141756478 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002685_100 Hb_002685_100 Hb_002304_190 Hb_002304_190 Hb_002685_100--Hb_002304_190 Hb_000336_280 Hb_000336_280 Hb_002685_100--Hb_000336_280 Hb_001832_110 Hb_001832_110 Hb_002685_100--Hb_001832_110 Hb_000017_320 Hb_000017_320 Hb_002685_100--Hb_000017_320 Hb_001358_120 Hb_001358_120 Hb_002685_100--Hb_001358_120 Hb_005333_210 Hb_005333_210 Hb_002685_100--Hb_005333_210 Hb_002304_190--Hb_001832_110 Hb_033312_050 Hb_033312_050 Hb_002304_190--Hb_033312_050 Hb_002304_190--Hb_000336_280 Hb_002304_190--Hb_000017_320 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120 Hb_000336_280--Hb_001832_110 Hb_001226_100 Hb_001226_100 Hb_000336_280--Hb_001226_100 Hb_000336_280--Hb_005333_210 Hb_000215_130 Hb_000215_130 Hb_000336_280--Hb_000215_130 Hb_001832_110--Hb_001226_100 Hb_001439_040 Hb_001439_040 Hb_001832_110--Hb_001439_040 Hb_000018_120 Hb_000018_120 Hb_001832_110--Hb_000018_120 Hb_002003_010 Hb_002003_010 Hb_000017_320--Hb_002003_010 Hb_001349_020 Hb_001349_020 Hb_000017_320--Hb_001349_020 Hb_005766_010 Hb_005766_010 Hb_000017_320--Hb_005766_010 Hb_005730_070 Hb_005730_070 Hb_000017_320--Hb_005730_070 Hb_009150_060 Hb_009150_060 Hb_001358_120--Hb_009150_060 Hb_003842_010 Hb_003842_010 Hb_001358_120--Hb_003842_010 Hb_001300_140 Hb_001300_140 Hb_001358_120--Hb_001300_140 Hb_011440_010 Hb_011440_010 Hb_001358_120--Hb_011440_010 Hb_001358_120--Hb_002304_190 Hb_002475_030 Hb_002475_030 Hb_001358_120--Hb_002475_030 Hb_005333_210--Hb_001300_140 Hb_079394_010 Hb_079394_010 Hb_005333_210--Hb_079394_010 Hb_005333_210--Hb_000215_130 Hb_000753_180 Hb_000753_180 Hb_005333_210--Hb_000753_180 Hb_001004_130 Hb_001004_130 Hb_005333_210--Hb_001004_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.2657 427.328 2179.9 1223.71 18.7659 45.9455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.3808 1.72497 14.7943 3370.15 1038.47

CAGE analysis