Hb_002685_110

Information

Type -
Description -
Location Contig2685: 119415-123900
Sequence    

Annotation

kegg
ID rcu:RCOM_1321780
description BTB/POZ domain-containing protein KCTD9, putative
nr
ID XP_002525705.1
description BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
swissprot
ID Q9SE95
description FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1
trembl
ID B9SI86
description BTB/POZ domain-containing protein KCTD9, putative OS=Ricinus communis GN=RCOM_1321780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27956: 121745-122080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_110 0.0 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
2 Hb_017224_030 0.0726900914 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
3 Hb_000249_070 0.0761061806 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
4 Hb_003761_010 0.077305406 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_005291_030 0.0779754406 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
6 Hb_002473_130 0.0783040025 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
7 Hb_000035_320 0.0792124352 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
8 Hb_011883_010 0.0828609533 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
9 Hb_005357_080 0.0833238674 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
10 Hb_003693_070 0.0834017003 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
11 Hb_001102_140 0.0838221943 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
12 Hb_000019_030 0.0838250861 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
13 Hb_002232_410 0.0854283422 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
14 Hb_002205_110 0.0856132302 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002303_070 0.0856326612 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
16 Hb_003376_330 0.0856355405 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
17 Hb_002675_070 0.0856478273 - - PREDICTED: protein CASC3 [Jatropha curcas]
18 Hb_000030_190 0.0856486952 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
19 Hb_011037_030 0.0857448309 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
20 Hb_000603_150 0.0860863864 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]

Gene co-expression network

sample Hb_002685_110 Hb_002685_110 Hb_017224_030 Hb_017224_030 Hb_002685_110--Hb_017224_030 Hb_000249_070 Hb_000249_070 Hb_002685_110--Hb_000249_070 Hb_003761_010 Hb_003761_010 Hb_002685_110--Hb_003761_010 Hb_005291_030 Hb_005291_030 Hb_002685_110--Hb_005291_030 Hb_002473_130 Hb_002473_130 Hb_002685_110--Hb_002473_130 Hb_000035_320 Hb_000035_320 Hb_002685_110--Hb_000035_320 Hb_011883_010 Hb_011883_010 Hb_017224_030--Hb_011883_010 Hb_017224_030--Hb_000035_320 Hb_017224_030--Hb_005291_030 Hb_003092_040 Hb_003092_040 Hb_017224_030--Hb_003092_040 Hb_000059_330 Hb_000059_330 Hb_017224_030--Hb_000059_330 Hb_169631_010 Hb_169631_010 Hb_000249_070--Hb_169631_010 Hb_002235_170 Hb_002235_170 Hb_000249_070--Hb_002235_170 Hb_002445_120 Hb_002445_120 Hb_000249_070--Hb_002445_120 Hb_000107_200 Hb_000107_200 Hb_000249_070--Hb_000107_200 Hb_022833_100 Hb_022833_100 Hb_000249_070--Hb_022833_100 Hb_001205_240 Hb_001205_240 Hb_003761_010--Hb_001205_240 Hb_000185_030 Hb_000185_030 Hb_003761_010--Hb_000185_030 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_002205_110 Hb_002205_110 Hb_003761_010--Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_005291_030--Hb_002473_130 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_001279_150 Hb_001279_150 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060 Hb_000976_410 Hb_000976_410 Hb_000035_320--Hb_000976_410 Hb_000671_050 Hb_000671_050 Hb_000035_320--Hb_000671_050 Hb_148644_010 Hb_148644_010 Hb_000035_320--Hb_148644_010 Hb_002835_080 Hb_002835_080 Hb_000035_320--Hb_002835_080 Hb_001538_130 Hb_001538_130 Hb_000035_320--Hb_001538_130 Hb_004032_150 Hb_004032_150 Hb_000035_320--Hb_004032_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.95674 6.34559 5.05168 10.0727 5.54082 10.6819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8 8.11255 8.4058 6.65501 5.05576

CAGE analysis