Hb_002685_120

Information

Type -
Description -
Location Contig2685: 124057-127787
Sequence    

Annotation

kegg
ID rcu:RCOM_1321770
description hypothetical protein
nr
ID XP_002525704.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SI85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1321770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27957: 124803-125349 , PASA_asmbl_27958: 125604-126246 , PASA_asmbl_27959: 126350-127007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001266_140 0.1665291759 - - PREDICTED: protein RER1B [Jatropha curcas]
3 Hb_000567_360 0.1765622304 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
4 Hb_118977_010 0.1774398245 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000198_070 0.1866238825 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
6 Hb_007777_020 0.1896967592 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
7 Hb_000140_490 0.1940739107 - - BnaC01g32630D [Brassica napus]
8 Hb_002750_050 0.1962077566 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
9 Hb_000189_510 0.2006799479 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
10 Hb_003580_030 0.2019745788 - - fimbrin, putative [Ricinus communis]
11 Hb_000342_080 0.2034774703 - - hypothetical protein L484_019524 [Morus notabilis]
12 Hb_005368_010 0.2046419746 - - PREDICTED: umecyanin-like [Jatropha curcas]
13 Hb_004668_110 0.2050985861 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000915_110 0.2053894047 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
15 Hb_007416_370 0.2096938554 - - conserved hypothetical protein [Ricinus communis]
16 Hb_032496_030 0.2100044117 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
17 Hb_000243_320 0.210146173 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001863_260 0.2106288883 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000540_150 0.2113728739 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
20 Hb_009851_110 0.2117773437 - - structural constituent of ribosome, putative [Ricinus communis]

Gene co-expression network

sample Hb_002685_120 Hb_002685_120 Hb_001266_140 Hb_001266_140 Hb_002685_120--Hb_001266_140 Hb_000567_360 Hb_000567_360 Hb_002685_120--Hb_000567_360 Hb_118977_010 Hb_118977_010 Hb_002685_120--Hb_118977_010 Hb_000198_070 Hb_000198_070 Hb_002685_120--Hb_000198_070 Hb_007777_020 Hb_007777_020 Hb_002685_120--Hb_007777_020 Hb_000140_490 Hb_000140_490 Hb_002685_120--Hb_000140_490 Hb_030827_030 Hb_030827_030 Hb_001266_140--Hb_030827_030 Hb_008556_030 Hb_008556_030 Hb_001266_140--Hb_008556_030 Hb_001266_140--Hb_000567_360 Hb_000797_050 Hb_000797_050 Hb_001266_140--Hb_000797_050 Hb_002681_170 Hb_002681_170 Hb_001266_140--Hb_002681_170 Hb_022693_030 Hb_022693_030 Hb_001266_140--Hb_022693_030 Hb_003044_100 Hb_003044_100 Hb_000567_360--Hb_003044_100 Hb_000915_110 Hb_000915_110 Hb_000567_360--Hb_000915_110 Hb_000364_060 Hb_000364_060 Hb_000567_360--Hb_000364_060 Hb_006064_010 Hb_006064_010 Hb_000567_360--Hb_006064_010 Hb_004195_280 Hb_004195_280 Hb_000567_360--Hb_004195_280 Hb_002587_020 Hb_002587_020 Hb_000567_360--Hb_002587_020 Hb_004846_040 Hb_004846_040 Hb_118977_010--Hb_004846_040 Hb_002184_150 Hb_002184_150 Hb_118977_010--Hb_002184_150 Hb_118977_010--Hb_000198_070 Hb_118977_010--Hb_001266_140 Hb_004994_320 Hb_004994_320 Hb_118977_010--Hb_004994_320 Hb_163950_030 Hb_163950_030 Hb_118977_010--Hb_163950_030 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_012132_040 Hb_012132_040 Hb_000198_070--Hb_012132_040 Hb_013691_020 Hb_013691_020 Hb_000198_070--Hb_013691_020 Hb_002067_020 Hb_002067_020 Hb_000198_070--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000198_070--Hb_000364_080 Hb_000523_090 Hb_000523_090 Hb_000198_070--Hb_000523_090 Hb_031866_060 Hb_031866_060 Hb_007777_020--Hb_031866_060 Hb_033642_100 Hb_033642_100 Hb_007777_020--Hb_033642_100 Hb_000866_420 Hb_000866_420 Hb_007777_020--Hb_000866_420 Hb_041392_010 Hb_041392_010 Hb_007777_020--Hb_041392_010 Hb_007777_020--Hb_012132_040 Hb_000159_110 Hb_000159_110 Hb_007777_020--Hb_000159_110 Hb_000140_490--Hb_001266_140 Hb_152453_010 Hb_152453_010 Hb_000140_490--Hb_152453_010 Hb_000365_160 Hb_000365_160 Hb_000140_490--Hb_000365_160 Hb_000140_490--Hb_012132_040 Hb_000140_490--Hb_000198_070 Hb_000009_650 Hb_000009_650 Hb_000140_490--Hb_000009_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.452186 0.0369217 0.620251 0.225007 0.830486 1.5594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.362879 0.190345 0.180162 0.0681969 0.401501

CAGE analysis