Hb_002685_140

Information

Type -
Description -
Location Contig2685: 135682-140281
Sequence    

Annotation

kegg
ID rcu:RCOM_1321740
description membrin, putative
nr
ID XP_012070403.1
description PREDICTED: membrin-11 [Jatropha curcas]
swissprot
ID Q9SJL6
description Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1
trembl
ID A0A067KU39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02682 PE=4 SV=1
Gene Ontology
ID GO:0005794
description membrin-11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27960: 135788-140181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_140 0.0 - - PREDICTED: membrin-11 [Jatropha curcas]
2 Hb_000327_120 0.0478061185 - - FGFR1 oncogene partner, putative [Ricinus communis]
3 Hb_001439_150 0.0601576472 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
4 Hb_011689_080 0.0641800218 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
5 Hb_001623_420 0.0666518618 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_001635_170 0.0668487304 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
7 Hb_007576_040 0.0706690054 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
8 Hb_000120_950 0.0724132188 - - PREDICTED: protein GRIP [Jatropha curcas]
9 Hb_002784_050 0.0741636619 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
10 Hb_001377_290 0.074204677 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
11 Hb_001511_020 0.0742868169 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
12 Hb_007951_060 0.0747448129 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_033843_010 0.0748349404 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
14 Hb_005503_030 0.0772025762 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
15 Hb_001584_330 0.0776787017 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
16 Hb_001404_100 0.0776892423 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
17 Hb_010661_030 0.078107043 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
18 Hb_004812_010 0.0782849654 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
19 Hb_000661_250 0.0785820261 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_033153_050 0.0786805127 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002685_140 Hb_002685_140 Hb_000327_120 Hb_000327_120 Hb_002685_140--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_001439_150--Hb_007951_060 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030 Hb_000398_180 Hb_000398_180 Hb_011689_080--Hb_000398_180 Hb_003058_130 Hb_003058_130 Hb_011689_080--Hb_003058_130 Hb_003392_040 Hb_003392_040 Hb_011689_080--Hb_003392_040 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_001377_290 Hb_001377_290 Hb_011689_080--Hb_001377_290 Hb_001584_330 Hb_001584_330 Hb_001623_420--Hb_001584_330 Hb_000120_950 Hb_000120_950 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_005306_110 Hb_005306_110 Hb_001623_420--Hb_005306_110 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_007576_040--Hb_010661_030 Hb_007576_040--Hb_007951_060 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_063716_050 Hb_063716_050 Hb_007576_040--Hb_063716_050 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.3907 13.8431 16.5066 12.0553 32.9532 27.6814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.0537 28.0275 28.9071 11.1553 7.35284

CAGE analysis