Hb_002685_170

Information

Type -
Description -
Location Contig2685: 157650-160793
Sequence    

Annotation

kegg
ID eus:EUTSA_v10019281mg
description hypothetical protein
nr
ID XP_006390966.1
description hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
swissprot
ID P25865
description Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1
trembl
ID V4KEK0
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019281mg PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27967: 157734-160723 , PASA_asmbl_27968: 157647-160754 , PASA_asmbl_27969: 157734-160723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_170 0.0 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
2 Hb_004491_010 0.0504418405 - - 60S ribosomal protein L51, putative [Ricinus communis]
3 Hb_005357_030 0.0578054312 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
4 Hb_004223_280 0.0588226886 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
5 Hb_007590_050 0.064603306 - - NudC domain-containing protein, putative [Ricinus communis]
6 Hb_028995_040 0.0724151069 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
7 Hb_003126_080 0.0732936793 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
8 Hb_001477_130 0.0758288229 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
9 Hb_000109_160 0.0762182825 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
10 Hb_000510_130 0.0780600055 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
11 Hb_001073_070 0.0820278339 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
12 Hb_126643_020 0.0829195683 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
13 Hb_000656_400 0.0832429887 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
14 Hb_001226_160 0.0844180365 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
15 Hb_000041_270 0.0849550427 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
16 Hb_012022_030 0.0855185674 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
17 Hb_002137_020 0.0856675143 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_002603_120 0.0867303856 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
19 Hb_001138_050 0.0870067762 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
20 Hb_000203_160 0.0870299154 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002685_170 Hb_002685_170 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_005357_030 Hb_005357_030 Hb_002685_170--Hb_005357_030 Hb_004223_280 Hb_004223_280 Hb_002685_170--Hb_004223_280 Hb_007590_050 Hb_007590_050 Hb_002685_170--Hb_007590_050 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002685_170--Hb_003126_080 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_004491_010--Hb_003126_080 Hb_005357_030--Hb_004223_280 Hb_005357_030--Hb_007590_050 Hb_001138_050 Hb_001138_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_000109_160 Hb_000109_160 Hb_007590_050--Hb_000109_160 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_007590_050--Hb_003126_080 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_003126_080--Hb_000656_400 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_003126_080--Hb_004223_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.703 115.309 53.0573 49.9648 104.918 121.209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.694 175.947 120.547 90.9433 30.7957

CAGE analysis