Hb_002685_180

Information

Type transcription factor
Description TF Family: LOB
Location Contig2685: 161448-162738
Sequence    

Annotation

kegg
ID rcu:RCOM_1321710
description LOB domain-containing protein, putative
nr
ID XP_002525698.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SRV3
description LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1
trembl
ID B9SI79
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1321710 PE=4 SV=1
Gene Ontology
ID GO:0009867
description lob domain-containing protein 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_180 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_000453_210 0.1626787343 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
3 Hb_001495_060 0.1882155102 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
4 Hb_007904_090 0.1894593303 - - PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera]
5 Hb_011242_030 0.1909087929 - - -
6 Hb_000376_160 0.2106006148 - - -
7 Hb_019033_010 0.2109109927 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
8 Hb_001143_010 0.2208015765 - - -
9 Hb_004502_080 0.2326552209 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
10 Hb_003209_030 0.2437504211 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
11 Hb_000699_110 0.2459823342 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
12 Hb_000922_180 0.2464481236 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
13 Hb_148909_020 0.2467683223 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_011431_010 0.2477342825 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_002835_220 0.2524366727 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
16 Hb_000175_040 0.2561241813 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
17 Hb_000445_330 0.2595332118 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002233_110 0.2611661096 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
19 Hb_000173_100 0.2621654187 - - -
20 Hb_065866_010 0.2627208589 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_002685_180 Hb_002685_180 Hb_000453_210 Hb_000453_210 Hb_002685_180--Hb_000453_210 Hb_001495_060 Hb_001495_060 Hb_002685_180--Hb_001495_060 Hb_007904_090 Hb_007904_090 Hb_002685_180--Hb_007904_090 Hb_011242_030 Hb_011242_030 Hb_002685_180--Hb_011242_030 Hb_000376_160 Hb_000376_160 Hb_002685_180--Hb_000376_160 Hb_019033_010 Hb_019033_010 Hb_002685_180--Hb_019033_010 Hb_001143_010 Hb_001143_010 Hb_000453_210--Hb_001143_010 Hb_000453_210--Hb_001495_060 Hb_008667_050 Hb_008667_050 Hb_000453_210--Hb_008667_050 Hb_003209_030 Hb_003209_030 Hb_000453_210--Hb_003209_030 Hb_001047_140 Hb_001047_140 Hb_000453_210--Hb_001047_140 Hb_000529_240 Hb_000529_240 Hb_001495_060--Hb_000529_240 Hb_001495_060--Hb_003209_030 Hb_001495_060--Hb_001143_010 Hb_001495_060--Hb_001047_140 Hb_007904_090--Hb_000376_160 Hb_011431_010 Hb_011431_010 Hb_007904_090--Hb_011431_010 Hb_068804_150 Hb_068804_150 Hb_007904_090--Hb_068804_150 Hb_000175_040 Hb_000175_040 Hb_007904_090--Hb_000175_040 Hb_008078_030 Hb_008078_030 Hb_007904_090--Hb_008078_030 Hb_011242_030--Hb_019033_010 Hb_011242_030--Hb_000453_210 Hb_001437_050 Hb_001437_050 Hb_011242_030--Hb_001437_050 Hb_000275_130 Hb_000275_130 Hb_011242_030--Hb_000275_130 Hb_011242_030--Hb_001495_060 Hb_000376_160--Hb_011431_010 Hb_000438_170 Hb_000438_170 Hb_000376_160--Hb_000438_170 Hb_000376_160--Hb_008078_030 Hb_127008_010 Hb_127008_010 Hb_000376_160--Hb_127008_010 Hb_000699_110 Hb_000699_110 Hb_019033_010--Hb_000699_110 Hb_004502_080 Hb_004502_080 Hb_019033_010--Hb_004502_080 Hb_019033_010--Hb_001437_050 Hb_019033_010--Hb_000175_040 Hb_019033_010--Hb_068804_150 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.415486 0.18618 0.109101 0.0305876 0.399984 0.134612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59277 0.876512 0 0.127305 0.123997

CAGE analysis