Hb_002685_210

Information

Type -
Description -
Location Contig2685: 187107-191643
Sequence    

Annotation

kegg
ID tcc:TCM_025844
description BTB-POZ and MATH domain 4 isoform 1
nr
ID XP_012070390.1
description PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9SRV1
description BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1
trembl
ID A0A067KU29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02672 PE=4 SV=1
Gene Ontology
ID GO:0005829
description btb poz and math domain-containing protein 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27982: 187291-191491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_210 0.0 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
2 Hb_000172_290 0.0656194238 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
3 Hb_029510_050 0.0681531627 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
4 Hb_029879_070 0.0713145663 - - PREDICTED: phospholipase A I [Jatropha curcas]
5 Hb_005490_030 0.0766883175 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
6 Hb_000254_090 0.0781777045 - - PREDICTED: la protein 2 [Jatropha curcas]
7 Hb_000631_080 0.080461288 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
8 Hb_000749_220 0.0825332712 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
9 Hb_002740_180 0.0839190761 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000173_290 0.0854730964 - - guanylate kinase, putative [Ricinus communis]
11 Hb_001696_010 0.0856495736 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
12 Hb_001971_010 0.0858181774 - - F23N19.4 [Arabidopsis thaliana]
13 Hb_001009_170 0.085925698 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_003177_030 0.0910117289 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
15 Hb_005054_100 0.0919183099 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
16 Hb_000206_210 0.0926660523 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
17 Hb_002496_010 0.0928543269 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
18 Hb_024128_020 0.0944296498 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
19 Hb_004225_050 0.0945039288 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
20 Hb_001341_070 0.0945914119 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002685_210 Hb_002685_210 Hb_000172_290 Hb_000172_290 Hb_002685_210--Hb_000172_290 Hb_029510_050 Hb_029510_050 Hb_002685_210--Hb_029510_050 Hb_029879_070 Hb_029879_070 Hb_002685_210--Hb_029879_070 Hb_005490_030 Hb_005490_030 Hb_002685_210--Hb_005490_030 Hb_000254_090 Hb_000254_090 Hb_002685_210--Hb_000254_090 Hb_000631_080 Hb_000631_080 Hb_002685_210--Hb_000631_080 Hb_054865_150 Hb_054865_150 Hb_000172_290--Hb_054865_150 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_006478_020 Hb_006478_020 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010 Hb_029510_050--Hb_000254_090 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_029879_070--Hb_000254_090 Hb_006275_070 Hb_006275_070 Hb_029879_070--Hb_006275_070 Hb_027380_220 Hb_027380_220 Hb_029879_070--Hb_027380_220 Hb_005291_050 Hb_005291_050 Hb_029879_070--Hb_005291_050 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_001344_010 Hb_001344_010 Hb_005490_030--Hb_001344_010 Hb_023001_060 Hb_023001_060 Hb_005490_030--Hb_023001_060 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005054_100 Hb_005054_100 Hb_005490_030--Hb_005054_100 Hb_000254_090--Hb_054865_150 Hb_000254_090--Hb_026198_070 Hb_000156_010 Hb_000156_010 Hb_000254_090--Hb_000156_010 Hb_000574_390 Hb_000574_390 Hb_000631_080--Hb_000574_390 Hb_086639_040 Hb_086639_040 Hb_000631_080--Hb_086639_040 Hb_000861_020 Hb_000861_020 Hb_000631_080--Hb_000861_020 Hb_015941_020 Hb_015941_020 Hb_000631_080--Hb_015941_020 Hb_004225_050 Hb_004225_050 Hb_000631_080--Hb_004225_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7212 5.29354 6.36546 12.0451 13.5514 16.1515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.746 12.9178 20.8806 11.909 17.0072

CAGE analysis