Hb_002685_220

Information

Type -
Description -
Location Contig2685: 192413-208796
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05610g
description POPTRDRAFT_248775; hypothetical protein
nr
ID XP_012070384.1
description PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
swissprot
ID Q8W4K3
description Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=2 SV=1
trembl
ID A0A067KTV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02671 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cationic amino acid transporter vacuolar

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27982: 187291-191491 , PASA_asmbl_27983: 192540-200044 , PASA_asmbl_27984: 195934-197631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_220 0.0 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
2 Hb_009222_080 0.0999609458 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
3 Hb_002097_080 0.1080066131 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
4 Hb_000107_550 0.1178350243 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
5 Hb_002740_100 0.1210526866 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
6 Hb_002495_030 0.123633244 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
7 Hb_001976_020 0.12531115 - - conserved hypothetical protein [Ricinus communis]
8 Hb_098795_030 0.1257856665 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
9 Hb_001486_100 0.1357227243 - - tubulin alpha chain, putative [Ricinus communis]
10 Hb_020378_020 0.1370164196 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_000979_160 0.1385437796 - - hypothetical protein RCOM_0629030 [Ricinus communis]
12 Hb_002110_090 0.1386648574 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
13 Hb_003177_090 0.1398836662 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
14 Hb_000326_080 0.1405568456 - - lrr receptor protein kinase, putative [Ricinus communis]
15 Hb_000714_120 0.142287928 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
16 Hb_030312_030 0.1436557341 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
17 Hb_003006_080 0.143676562 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_072398_010 0.144715293 - - pepsin A, putative [Ricinus communis]
19 Hb_000181_230 0.1467603077 - - copper ion binding protein, putative [Ricinus communis]
20 Hb_000959_120 0.147022127 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002685_220 Hb_002685_220 Hb_009222_080 Hb_009222_080 Hb_002685_220--Hb_009222_080 Hb_002097_080 Hb_002097_080 Hb_002685_220--Hb_002097_080 Hb_000107_550 Hb_000107_550 Hb_002685_220--Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_002685_220--Hb_002740_100 Hb_002495_030 Hb_002495_030 Hb_002685_220--Hb_002495_030 Hb_001976_020 Hb_001976_020 Hb_002685_220--Hb_001976_020 Hb_006916_140 Hb_006916_140 Hb_009222_080--Hb_006916_140 Hb_005725_160 Hb_005725_160 Hb_009222_080--Hb_005725_160 Hb_010968_030 Hb_010968_030 Hb_009222_080--Hb_010968_030 Hb_005329_030 Hb_005329_030 Hb_009222_080--Hb_005329_030 Hb_000245_100 Hb_000245_100 Hb_009222_080--Hb_000245_100 Hb_002097_080--Hb_001976_020 Hb_014361_040 Hb_014361_040 Hb_002097_080--Hb_014361_040 Hb_098795_030 Hb_098795_030 Hb_002097_080--Hb_098795_030 Hb_002685_160 Hb_002685_160 Hb_002097_080--Hb_002685_160 Hb_000028_580 Hb_000028_580 Hb_002097_080--Hb_000028_580 Hb_000107_550--Hb_002740_100 Hb_002110_090 Hb_002110_090 Hb_000107_550--Hb_002110_090 Hb_003092_050 Hb_003092_050 Hb_000107_550--Hb_003092_050 Hb_000181_230 Hb_000181_230 Hb_000107_550--Hb_000181_230 Hb_003006_080 Hb_003006_080 Hb_000107_550--Hb_003006_080 Hb_005724_040 Hb_005724_040 Hb_002740_100--Hb_005724_040 Hb_001486_100 Hb_001486_100 Hb_002740_100--Hb_001486_100 Hb_002740_100--Hb_000181_230 Hb_006414_010 Hb_006414_010 Hb_002740_100--Hb_006414_010 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100 Hb_000326_080 Hb_000326_080 Hb_002740_100--Hb_000326_080 Hb_002495_030--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_002495_030--Hb_006615_230 Hb_000580_110 Hb_000580_110 Hb_002495_030--Hb_000580_110 Hb_001008_080 Hb_001008_080 Hb_002495_030--Hb_001008_080 Hb_003052_080 Hb_003052_080 Hb_002495_030--Hb_003052_080 Hb_007590_100 Hb_007590_100 Hb_002495_030--Hb_007590_100 Hb_000979_160 Hb_000979_160 Hb_001976_020--Hb_000979_160 Hb_001976_020--Hb_098795_030 Hb_000959_120 Hb_000959_120 Hb_001976_020--Hb_000959_120 Hb_001976_020--Hb_007590_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379401 8.1923 4.5622 17.0979 0.539406 1.63521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.523558 0.437738 0.294944 6.69414 16.5002

CAGE analysis