Hb_002686_040

Information

Type -
Description -
Location Contig2686: 22273-32281
Sequence    

Annotation

kegg
ID vvi:100257135
description T-complex protein 1 subunit theta
nr
ID XP_012070465.1
description PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
swissprot
ID Q94K05
description T-complex protein 1 subunit theta OS=Arabidopsis thaliana GN=CCT8 PE=1 SV=1
trembl
ID A0A067L6N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02729 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit theta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27989: 22279-32273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_040 0.0 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
2 Hb_103747_020 0.0557019717 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
3 Hb_006618_090 0.0607992219 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
4 Hb_005723_020 0.061402793 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000174_060 0.0674436338 - - zinc finger family protein [Populus trichocarpa]
6 Hb_007894_160 0.071274874 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
7 Hb_000398_080 0.0715275453 - - tip120, putative [Ricinus communis]
8 Hb_140049_080 0.0725330966 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
9 Hb_003436_020 0.0757304023 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
10 Hb_000317_510 0.0765787234 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
11 Hb_000949_020 0.0782847782 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
12 Hb_004129_070 0.078361983 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
13 Hb_002014_040 0.0785207398 - - site-1 protease, putative [Ricinus communis]
14 Hb_004109_370 0.0788145392 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_000261_240 0.078967538 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
16 Hb_178968_050 0.0791715817 - - PREDICTED: probable serine incorporator [Jatropha curcas]
17 Hb_000563_130 0.0810917795 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
18 Hb_001318_070 0.0814560381 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
19 Hb_142218_020 0.0820997944 - - actin family protein [Populus trichocarpa]
20 Hb_008226_090 0.0824223966 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_040 Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_002686_040--Hb_103747_020 Hb_006618_090 Hb_006618_090 Hb_002686_040--Hb_006618_090 Hb_005723_020 Hb_005723_020 Hb_002686_040--Hb_005723_020 Hb_000174_060 Hb_000174_060 Hb_002686_040--Hb_000174_060 Hb_007894_160 Hb_007894_160 Hb_002686_040--Hb_007894_160 Hb_000398_080 Hb_000398_080 Hb_002686_040--Hb_000398_080 Hb_000317_510 Hb_000317_510 Hb_103747_020--Hb_000317_510 Hb_002014_040 Hb_002014_040 Hb_103747_020--Hb_002014_040 Hb_103747_020--Hb_005723_020 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_008226_090 Hb_008226_090 Hb_103747_020--Hb_008226_090 Hb_009771_110 Hb_009771_110 Hb_006618_090--Hb_009771_110 Hb_005053_010 Hb_005053_010 Hb_006618_090--Hb_005053_010 Hb_007929_080 Hb_007929_080 Hb_006618_090--Hb_007929_080 Hb_000523_080 Hb_000523_080 Hb_006618_090--Hb_000523_080 Hb_000261_030 Hb_000261_030 Hb_006618_090--Hb_000261_030 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170 Hb_007894_160--Hb_000610_040 Hb_008397_010 Hb_008397_010 Hb_007894_160--Hb_008397_010 Hb_000243_130 Hb_000243_130 Hb_007894_160--Hb_000243_130 Hb_007894_160--Hb_103747_020 Hb_002475_040 Hb_002475_040 Hb_007894_160--Hb_002475_040 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000603_030 Hb_000603_030 Hb_000398_080--Hb_000603_030 Hb_004267_040 Hb_004267_040 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4949 45.3857 45.3253 39.1412 46.1637 43.271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4233 15.2373 25.6009 44.6361 30.1378

CAGE analysis