Hb_002686_060

Information

Type -
Description -
Location Contig2686: 36468-38617
Sequence    

Annotation

kegg
ID rcu:RCOM_1121740
description hypothetical protein
nr
ID XP_002525436.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94AQ8
description Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thaliana GN=PNSB2 PE=2 SV=1
trembl
ID B9SHG7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1121740 PE=4 SV=1
Gene Ontology
ID GO:0003824
description photosynthetic ndh subunit of subcomplex b chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27990: 35872-36287 , PASA_asmbl_27991: 36498-38437
cDNA
(Sanger)
(ID:Location)		 045_B23.ab1: 36498-37805 , 047_B06.ab1: 36564-37805

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000699_080 0.1153707797 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
3 Hb_000038_020 0.1364209418 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
4 Hb_003336_020 0.1403898184 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
5 Hb_000012_010 0.1412526934 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
6 Hb_000359_070 0.1447800666 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
7 Hb_168031_020 0.1467585395 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
8 Hb_006925_030 0.1472245032 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
9 Hb_003952_050 0.1549912323 - - beta-galactosidase, putative [Ricinus communis]
10 Hb_000667_140 0.1557191116 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
11 Hb_000890_110 0.1558718766 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
12 Hb_012940_020 0.1584840084 - - zeaxanthin epoxidase, putative [Ricinus communis]
13 Hb_000120_900 0.1679070029 - - catalase [Hevea brasiliensis]
14 Hb_088080_030 0.1722236509 - - ribosomal protein S4 [Hevea brasiliensis]
15 Hb_028960_010 0.1748013679 - - phosphoglycerate kinase, putative [Ricinus communis]
16 Hb_011053_020 0.175711638 - - lipoic acid synthetase, putative [Ricinus communis]
17 Hb_005332_150 0.1799503582 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
18 Hb_011900_020 0.1834549102 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
19 Hb_189099_020 0.1840614457 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
20 Hb_001266_160 0.1862897922 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002686_060 Hb_002686_060 Hb_000699_080 Hb_000699_080 Hb_002686_060--Hb_000699_080 Hb_000038_020 Hb_000038_020 Hb_002686_060--Hb_000038_020 Hb_003336_020 Hb_003336_020 Hb_002686_060--Hb_003336_020 Hb_000012_010 Hb_000012_010 Hb_002686_060--Hb_000012_010 Hb_000359_070 Hb_000359_070 Hb_002686_060--Hb_000359_070 Hb_168031_020 Hb_168031_020 Hb_002686_060--Hb_168031_020 Hb_006925_030 Hb_006925_030 Hb_000699_080--Hb_006925_030 Hb_000699_080--Hb_003336_020 Hb_000699_080--Hb_000038_020 Hb_000120_900 Hb_000120_900 Hb_000699_080--Hb_000120_900 Hb_000699_080--Hb_168031_020 Hb_000667_140 Hb_000667_140 Hb_000038_020--Hb_000667_140 Hb_000038_020--Hb_168031_020 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370 Hb_012940_020 Hb_012940_020 Hb_003336_020--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_003336_020--Hb_028960_010 Hb_003336_020--Hb_000359_070 Hb_156850_020 Hb_156850_020 Hb_003336_020--Hb_156850_020 Hb_002304_180 Hb_002304_180 Hb_000012_010--Hb_002304_180 Hb_011053_020 Hb_011053_020 Hb_000012_010--Hb_011053_020 Hb_000189_520 Hb_000189_520 Hb_000012_010--Hb_000189_520 Hb_000023_210 Hb_000023_210 Hb_000012_010--Hb_000023_210 Hb_000012_010--Hb_000667_140 Hb_000866_050 Hb_000866_050 Hb_000012_010--Hb_000866_050 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_000359_070--Hb_156850_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000359_070--Hb_012940_020 Hb_000359_070--Hb_028960_010 Hb_168031_020--Hb_005332_150 Hb_001793_030 Hb_001793_030 Hb_168031_020--Hb_001793_030 Hb_000890_110 Hb_000890_110 Hb_168031_020--Hb_000890_110 Hb_168031_020--Hb_000359_070 Hb_078477_060 Hb_078477_060 Hb_168031_020--Hb_078477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.383815 1.11767 3.86247 2.76973 0.185125 0.91832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60057 0.847551 3.04973 2.0295 32.085

CAGE analysis