Hb_002686_140

Information

Type -
Description -
Location Contig2686: 74750-89312
Sequence    

Annotation

kegg
ID rcu:RCOM_1121820
description hypothetical protein
nr
ID XP_012092684.1
description PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
swissprot
ID O75175
description CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1
trembl
ID A0A067JC18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06854 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ccr4-not transcription complex subunit 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28002: 74771-89267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_140 0.0 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
2 Hb_002631_210 0.0648659577 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
3 Hb_002276_040 0.0686384029 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
4 Hb_000080_110 0.0745491656 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
5 Hb_000347_300 0.074882169 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
6 Hb_009615_160 0.0770070616 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
7 Hb_022425_060 0.0776039794 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
8 Hb_004696_070 0.078336006 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
9 Hb_003124_270 0.0783859014 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
10 Hb_005074_020 0.078839432 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
11 Hb_001511_180 0.079794736 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
12 Hb_008165_020 0.080406486 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
13 Hb_000015_200 0.0804910691 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
14 Hb_009372_020 0.0805798644 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
15 Hb_006478_030 0.081828341 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
16 Hb_012490_010 0.0825987147 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
17 Hb_001828_170 0.0828743658 - - PREDICTED: protein TPLATE [Jatropha curcas]
18 Hb_009476_120 0.0873795159 - - Clathrin heavy chain 1 [Glycine soja]
19 Hb_004884_090 0.0894482947 - - importin beta-1, putative [Ricinus communis]
20 Hb_000960_080 0.0904361361 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_140 Hb_002686_140 Hb_002631_210 Hb_002631_210 Hb_002686_140--Hb_002631_210 Hb_002276_040 Hb_002276_040 Hb_002686_140--Hb_002276_040 Hb_000080_110 Hb_000080_110 Hb_002686_140--Hb_000080_110 Hb_000347_300 Hb_000347_300 Hb_002686_140--Hb_000347_300 Hb_009615_160 Hb_009615_160 Hb_002686_140--Hb_009615_160 Hb_022425_060 Hb_022425_060 Hb_002686_140--Hb_022425_060 Hb_011883_020 Hb_011883_020 Hb_002631_210--Hb_011883_020 Hb_001691_200 Hb_001691_200 Hb_002631_210--Hb_001691_200 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_005074_020 Hb_005074_020 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030 Hb_002276_040--Hb_005074_020 Hb_002276_040--Hb_000080_110 Hb_002276_040--Hb_009615_160 Hb_002276_040--Hb_011883_020 Hb_001329_200 Hb_001329_200 Hb_002276_040--Hb_001329_200 Hb_000321_090 Hb_000321_090 Hb_000080_110--Hb_000321_090 Hb_000080_110--Hb_005074_020 Hb_033799_010 Hb_033799_010 Hb_000080_110--Hb_033799_010 Hb_000049_250 Hb_000049_250 Hb_000080_110--Hb_000049_250 Hb_011925_020 Hb_011925_020 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_001828_170 Hb_001828_170 Hb_000347_300--Hb_001828_170 Hb_002817_060 Hb_002817_060 Hb_000347_300--Hb_002817_060 Hb_022425_030 Hb_022425_030 Hb_000347_300--Hb_022425_030 Hb_004044_050 Hb_004044_050 Hb_000347_300--Hb_004044_050 Hb_000347_300--Hb_022425_060 Hb_009615_160--Hb_001329_200 Hb_016172_030 Hb_016172_030 Hb_009615_160--Hb_016172_030 Hb_021165_010 Hb_021165_010 Hb_009615_160--Hb_021165_010 Hb_009615_160--Hb_005074_020 Hb_060980_010 Hb_060980_010 Hb_009615_160--Hb_060980_010 Hb_024650_080 Hb_024650_080 Hb_009615_160--Hb_024650_080 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25783 26.4624 15.5321 19.845 8.12561 6.56588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.49902 5.89711 12.1261 19.6589 18.647

CAGE analysis