Hb_002686_160

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig2686: 101296-103029
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04860g
description POPTRDRAFT_573903; hypothetical protein
nr
ID XP_011010123.1
description PREDICTED: GATA transcription factor 12-like [Populus euphratica]
swissprot
ID O82632
description GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1
trembl
ID B9IPN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s04860g PE=4 SV=2
Gene Ontology
ID GO:0005488
description gata transcription factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28008: 101159-102752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_160 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Populus euphratica]
2 Hb_000589_170 0.143107455 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
3 Hb_000757_130 0.1488003168 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001729_020 0.1566852366 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
5 Hb_001377_530 0.1577958495 - - NC domain-containing family protein [Populus trichocarpa]
6 Hb_003894_030 0.1603498733 - - plant sec1, putative [Ricinus communis]
7 Hb_005305_120 0.1608417294 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
8 Hb_012762_040 0.1609563402 - - big map kinase/bmk, putative [Ricinus communis]
9 Hb_061256_010 0.1616780766 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
10 Hb_021409_070 0.1653357733 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
11 Hb_000098_180 0.1657080696 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
12 Hb_000011_560 0.1668698609 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
13 Hb_004361_060 0.1669238321 - - PREDICTED: uncharacterized protein LOC105636705 [Jatropha curcas]
14 Hb_054865_050 0.1671969932 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_001168_070 0.1680944103 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
16 Hb_004003_030 0.1699850577 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001198_080 0.1710919764 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
18 Hb_001381_060 0.1712930245 - - monoxygenase, putative [Ricinus communis]
19 Hb_027506_040 0.1722063955 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_001155_050 0.1743601837 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002686_160 Hb_002686_160 Hb_000589_170 Hb_000589_170 Hb_002686_160--Hb_000589_170 Hb_000757_130 Hb_000757_130 Hb_002686_160--Hb_000757_130 Hb_001729_020 Hb_001729_020 Hb_002686_160--Hb_001729_020 Hb_001377_530 Hb_001377_530 Hb_002686_160--Hb_001377_530 Hb_003894_030 Hb_003894_030 Hb_002686_160--Hb_003894_030 Hb_005305_120 Hb_005305_120 Hb_002686_160--Hb_005305_120 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_029253_010 Hb_029253_010 Hb_000757_130--Hb_029253_010 Hb_000922_320 Hb_000922_320 Hb_000757_130--Hb_000922_320 Hb_000757_130--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_000757_130--Hb_001155_050 Hb_004679_040 Hb_004679_040 Hb_000757_130--Hb_004679_040 Hb_002374_270 Hb_002374_270 Hb_000757_130--Hb_002374_270 Hb_001729_020--Hb_000979_140 Hb_002686_150 Hb_002686_150 Hb_001729_020--Hb_002686_150 Hb_000711_010 Hb_000711_010 Hb_001729_020--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_001729_020--Hb_002349_030 Hb_003428_090 Hb_003428_090 Hb_001729_020--Hb_003428_090 Hb_002965_050 Hb_002965_050 Hb_001729_020--Hb_002965_050 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_003398_040 Hb_003398_040 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_003299_020 Hb_003299_020 Hb_001377_530--Hb_003299_020 Hb_001408_170 Hb_001408_170 Hb_001377_530--Hb_001408_170 Hb_003740_020 Hb_003740_020 Hb_003894_030--Hb_003740_020 Hb_003894_030--Hb_013405_070 Hb_003894_030--Hb_002374_270 Hb_003894_030--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_003894_030--Hb_000000_480 Hb_000527_080 Hb_000527_080 Hb_003894_030--Hb_000527_080 Hb_002835_280 Hb_002835_280 Hb_005305_120--Hb_002835_280 Hb_000861_100 Hb_000861_100 Hb_005305_120--Hb_000861_100 Hb_001124_140 Hb_001124_140 Hb_005305_120--Hb_001124_140 Hb_002759_100 Hb_002759_100 Hb_005305_120--Hb_002759_100 Hb_009449_100 Hb_009449_100 Hb_005305_120--Hb_009449_100 Hb_005731_100 Hb_005731_100 Hb_005305_120--Hb_005731_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.30926 12.8783 32.35 19.4006 0.340352 0.616375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63979 4.52291 7.40966 9.84091 15.6432

CAGE analysis