Hb_002686_200

Information

Type -
Description -
Location Contig2686: 126796-139034
Sequence    

Annotation

kegg
ID rcu:RCOM_1122020
description glucosidase II beta subunit, putative
nr
ID XP_002525454.1
description glucosidase II beta subunit, putative [Ricinus communis]
swissprot
ID A2WNF5
description Glucosidase 2 subunit beta OS=Oryza sativa subsp. indica GN=OsI_01383 PE=3 SV=1
trembl
ID B9SHI5
description Glucosidase II beta subunit, putative OS=Ricinus communis GN=RCOM_1122020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28024: 128779-139205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_200 0.0 - - glucosidase II beta subunit, putative [Ricinus communis]
2 Hb_065968_010 0.0605780349 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
3 Hb_159809_070 0.075710634 - - phospholipase A-2-activating protein, putative [Ricinus communis]
4 Hb_001269_600 0.0791833327 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_003159_050 0.079782602 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_007933_040 0.0798471064 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
7 Hb_006824_010 0.0803780016 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
8 Hb_001703_050 0.0805011538 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
9 Hb_000703_330 0.080628344 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001957_010 0.0817326873 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
11 Hb_004096_110 0.084857422 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
12 Hb_001828_180 0.0850733277 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
13 Hb_000197_190 0.0871759127 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
14 Hb_004837_280 0.089243932 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
15 Hb_002093_060 0.0909271236 - - phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_031527_080 0.0910065375 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
17 Hb_008289_040 0.0911829729 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
18 Hb_001493_150 0.0923261228 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
19 Hb_001205_080 0.0931945035 - - Protein FAM96B, putative [Ricinus communis]
20 Hb_003605_020 0.0961100839 - - exocyst complex component sec6, putative [Ricinus communis]

Gene co-expression network

sample Hb_002686_200 Hb_002686_200 Hb_065968_010 Hb_065968_010 Hb_002686_200--Hb_065968_010 Hb_159809_070 Hb_159809_070 Hb_002686_200--Hb_159809_070 Hb_001269_600 Hb_001269_600 Hb_002686_200--Hb_001269_600 Hb_003159_050 Hb_003159_050 Hb_002686_200--Hb_003159_050 Hb_007933_040 Hb_007933_040 Hb_002686_200--Hb_007933_040 Hb_006824_010 Hb_006824_010 Hb_002686_200--Hb_006824_010 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_065968_010--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_001957_010 Hb_001957_010 Hb_065968_010--Hb_001957_010 Hb_001227_120 Hb_001227_120 Hb_159809_070--Hb_001227_120 Hb_000078_140 Hb_000078_140 Hb_159809_070--Hb_000078_140 Hb_079526_040 Hb_079526_040 Hb_159809_070--Hb_079526_040 Hb_006189_020 Hb_006189_020 Hb_159809_070--Hb_006189_020 Hb_008304_020 Hb_008304_020 Hb_159809_070--Hb_008304_020 Hb_001703_050 Hb_001703_050 Hb_001269_600--Hb_001703_050 Hb_001269_600--Hb_003159_050 Hb_000409_050 Hb_000409_050 Hb_001269_600--Hb_000409_050 Hb_001828_180 Hb_001828_180 Hb_001269_600--Hb_001828_180 Hb_004096_110 Hb_004096_110 Hb_001269_600--Hb_004096_110 Hb_000363_190 Hb_000363_190 Hb_001269_600--Hb_000363_190 Hb_003159_050--Hb_007933_040 Hb_012733_040 Hb_012733_040 Hb_003159_050--Hb_012733_040 Hb_007741_120 Hb_007741_120 Hb_003159_050--Hb_007741_120 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_011537_060 Hb_011537_060 Hb_007933_040--Hb_011537_060 Hb_007933_040--Hb_007741_120 Hb_106890_010 Hb_106890_010 Hb_007933_040--Hb_106890_010 Hb_003340_010 Hb_003340_010 Hb_007933_040--Hb_003340_010 Hb_002006_150 Hb_002006_150 Hb_006824_010--Hb_002006_150 Hb_007904_300 Hb_007904_300 Hb_006824_010--Hb_007904_300 Hb_000139_080 Hb_000139_080 Hb_006824_010--Hb_000139_080 Hb_006824_010--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_006824_010--Hb_003098_070 Hb_001269_130 Hb_001269_130 Hb_006824_010--Hb_001269_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31873 5.91088 12.2762 15.8212 5.51006 4.68951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.29002 6.024 7.49548 16.635 11.9549

CAGE analysis