Hb_002686_250

Information

Type -
Description -
Location Contig2686: 162341-168337
Sequence    

Annotation

kegg
ID rcu:RCOM_1122320
description RNA binding protein, putative
nr
ID XP_012092703.1
description PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
swissprot
ID Q8RWV8
description U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana GN=SNRNP65 PE=1 SV=1
trembl
ID B9SHJ5
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1122320 PE=4 SV=1
Gene Ontology
ID GO:0097159
description u11 u12 small nuclear ribonucleoprotein 65 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28035: 161846-165676 , PASA_asmbl_28036: 166242-168280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_250 0.0 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
2 Hb_131646_010 0.0356635007 - - protein arginine n-methyltransferase, putative [Ricinus communis]
3 Hb_004055_150 0.0418710954 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003029_030 0.051793541 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
5 Hb_004785_100 0.0520389229 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001926_030 0.0529404509 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
7 Hb_002078_110 0.0537981453 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
8 Hb_002835_230 0.0541143309 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_033720_010 0.0593992162 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
10 Hb_000853_230 0.0598501277 - - syntaxin, putative [Ricinus communis]
11 Hb_006620_020 0.06011851 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_006960_050 0.0665902943 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
13 Hb_000879_200 0.0697815949 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
14 Hb_031527_020 0.0718131992 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
15 Hb_003813_040 0.0721729438 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
16 Hb_000656_250 0.0732113107 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
17 Hb_005489_080 0.0736377494 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007416_300 0.0737885996 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
19 Hb_005993_050 0.0739440136 - - Protein AFR, putative [Ricinus communis]
20 Hb_001347_040 0.0746010727 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_250 Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_002686_250--Hb_131646_010 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_003029_030 Hb_003029_030 Hb_002686_250--Hb_003029_030 Hb_004785_100 Hb_004785_100 Hb_002686_250--Hb_004785_100 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_002078_110 Hb_002078_110 Hb_002686_250--Hb_002078_110 Hb_131646_010--Hb_004785_100 Hb_002835_230 Hb_002835_230 Hb_131646_010--Hb_002835_230 Hb_131646_010--Hb_003029_030 Hb_131646_010--Hb_002078_110 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040 Hb_004055_150--Hb_001926_030 Hb_000853_230 Hb_000853_230 Hb_004055_150--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_004055_150--Hb_006620_020 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_033720_010 Hb_033720_010 Hb_003029_030--Hb_033720_010 Hb_001408_100 Hb_001408_100 Hb_003029_030--Hb_001408_100 Hb_002351_020 Hb_002351_020 Hb_003029_030--Hb_002351_020 Hb_010068_040 Hb_010068_040 Hb_003029_030--Hb_010068_040 Hb_004785_100--Hb_002835_230 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_004785_100--Hb_006960_050 Hb_004785_100--Hb_002078_110 Hb_000879_200 Hb_000879_200 Hb_001926_030--Hb_000879_200 Hb_001926_030--Hb_006620_020 Hb_001926_030--Hb_000853_230 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_002078_110--Hb_002835_230 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9425 11.2028 10.3596 7.16695 16.2974 12.4895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.99242 8.34532 9.00852 7.46328 6.10086

CAGE analysis