Hb_002686_270

Information

Type -
Description -
Location Contig2686: 191560-195644
Sequence    

Annotation

kegg
ID rcu:RCOM_1122440
description hypothetical protein
nr
ID XP_002525466.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHJ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1122440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28038: 191565-195574
cDNA
(Sanger)
(ID:Location)		 028_D17.ab1: 194521-195573 , 029_P12.ab1: 192307-195508 , 044_I01.ab1: 192348-195523 , 050_C07.ab1: 194918-195574

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001030_120 0.0577953087 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_133271_020 0.0625957417 - - prohibitin, putative [Ricinus communis]
4 Hb_158092_070 0.0674579826 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_000975_290 0.0686367487 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
6 Hb_000152_140 0.0708738286 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
7 Hb_001454_140 0.0756870284 - - protein arginine n-methyltransferase, putative [Ricinus communis]
8 Hb_182026_020 0.0775364843 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
9 Hb_004662_030 0.0791597176 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
10 Hb_000418_100 0.0800798567 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
11 Hb_001454_210 0.0809270897 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
12 Hb_001047_020 0.0827759318 - - -
13 Hb_015001_020 0.0829036206 - - PREDICTED: la-related protein 6B [Jatropha curcas]
14 Hb_000029_030 0.0830080894 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
15 Hb_007919_050 0.0830881669 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
16 Hb_028872_140 0.0831144188 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
17 Hb_001246_100 0.083485794 - - Ras-related small GTP-binding family protein [Theobroma cacao]
18 Hb_006447_010 0.0834943633 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
19 Hb_004046_010 0.0845097899 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
20 Hb_002215_050 0.0857346947 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002686_270 Hb_002686_270 Hb_001030_120 Hb_001030_120 Hb_002686_270--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_002686_270--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_002686_270--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_002686_270--Hb_000975_290 Hb_000152_140 Hb_000152_140 Hb_002686_270--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002686_270--Hb_001454_140 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_133271_020--Hb_000975_290 Hb_133271_020--Hb_001030_120 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_158092_070--Hb_001030_120 Hb_158092_070--Hb_000975_290 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_000975_290--Hb_001030_120 Hb_071736_020 Hb_071736_020 Hb_000975_290--Hb_071736_020 Hb_003086_020 Hb_003086_020 Hb_000152_140--Hb_003086_020 Hb_002025_320 Hb_002025_320 Hb_000152_140--Hb_002025_320 Hb_000700_090 Hb_000700_090 Hb_000152_140--Hb_000700_090 Hb_000696_110 Hb_000696_110 Hb_000152_140--Hb_000696_110 Hb_005941_010 Hb_005941_010 Hb_000152_140--Hb_005941_010 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_002374_160 Hb_002374_160 Hb_001454_140--Hb_002374_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
366.606 112.733 37.8658 122.301 323.581 490.775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
395.402 315.522 392.457 142.572 58.7847

CAGE analysis