Hb_002686_280

Information

Type transcription factor
Description TF Family: NAC
Location Contig2686: 202053-203646
Sequence    

Annotation

kegg
ID rcu:RCOM_1122450
description transcription factor, putative
nr
ID XP_002525467.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8H4S4
description NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1
trembl
ID B9SHJ8
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1122450 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28039: 201736-203567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_280 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_002273_050 0.1287801255 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
3 Hb_002273_080 0.1289568568 - - geranylgeranyl reductase [Monoraphidium neglectum]
4 Hb_002235_240 0.1408177959 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
5 Hb_001269_040 0.1463694621 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_042175_010 0.1473605317 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
7 Hb_003849_260 0.1527771374 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
8 Hb_129204_060 0.1537647449 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
9 Hb_000836_120 0.1625708439 - - syntaxin, putative [Ricinus communis]
10 Hb_000215_410 0.1777257665 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
11 Hb_004724_130 0.1820483005 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
12 Hb_001225_090 0.1853741596 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
13 Hb_001863_150 0.1892222515 - - VQ motif-containing family protein [Populus trichocarpa]
14 Hb_004108_170 0.1919385165 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005147_040 0.1931326974 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
16 Hb_000010_350 0.1982241957 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
17 Hb_000160_240 0.1994043489 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
18 Hb_001141_360 0.2012559986 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
19 Hb_141918_010 0.2046925184 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
20 Hb_000538_190 0.2049160006 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]

Gene co-expression network

sample Hb_002686_280 Hb_002686_280 Hb_002273_050 Hb_002273_050 Hb_002686_280--Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_002686_280--Hb_002273_080 Hb_002235_240 Hb_002235_240 Hb_002686_280--Hb_002235_240 Hb_001269_040 Hb_001269_040 Hb_002686_280--Hb_001269_040 Hb_042175_010 Hb_042175_010 Hb_002686_280--Hb_042175_010 Hb_003849_260 Hb_003849_260 Hb_002686_280--Hb_003849_260 Hb_002273_050--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_002273_050--Hb_001269_690 Hb_129204_060 Hb_129204_060 Hb_002273_050--Hb_129204_060 Hb_002273_080--Hb_000215_410 Hb_002273_080--Hb_129204_060 Hb_002273_080--Hb_001269_690 Hb_002273_080--Hb_001269_040 Hb_002235_240--Hb_129204_060 Hb_002235_240--Hb_000836_120 Hb_002235_240--Hb_003849_260 Hb_002235_240--Hb_000215_410 Hb_001141_360 Hb_001141_360 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_001269_040--Hb_002273_050 Hb_012404_040 Hb_012404_040 Hb_001269_040--Hb_012404_040 Hb_001338_050 Hb_001338_050 Hb_001269_040--Hb_001338_050 Hb_025194_010 Hb_025194_010 Hb_001269_040--Hb_025194_010 Hb_003060_090 Hb_003060_090 Hb_042175_010--Hb_003060_090 Hb_042175_010--Hb_001141_360 Hb_042175_010--Hb_001863_150 Hb_001865_060 Hb_001865_060 Hb_042175_010--Hb_001865_060 Hb_000010_350 Hb_000010_350 Hb_042175_010--Hb_000010_350 Hb_003849_260--Hb_000836_120 Hb_003849_260--Hb_001141_360 Hb_004800_190 Hb_004800_190 Hb_003849_260--Hb_004800_190 Hb_001584_220 Hb_001584_220 Hb_003849_260--Hb_001584_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.77906 26.1071 0.738024 1.63681 2.83666 6.0738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27672 2.58703 0.903279 10.198 1.89238

CAGE analysis