Hb_002686_290

Information

Type -
Description -
Location Contig2686: 213900-214992
Sequence    

Annotation

kegg
ID rcu:RCOM_1122470
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_011034425.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
swissprot
ID Q9LFQ4
description Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2
trembl
ID B9SHK0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1122470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_290 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
2 Hb_000179_210 0.0863100584 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
3 Hb_000614_230 0.0872411515 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
4 Hb_171900_080 0.0926132182 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_006816_140 0.0937521224 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
6 Hb_003266_130 0.0957453252 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
7 Hb_001085_170 0.0968603055 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
8 Hb_007632_220 0.0972503841 - - RNA-binding protein, putative [Ricinus communis]
9 Hb_006501_040 0.0987789031 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
10 Hb_178968_110 0.1017864791 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
11 Hb_001277_330 0.101929183 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
12 Hb_011918_080 0.1022526116 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
13 Hb_007672_050 0.1023809217 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_009048_040 0.1038349157 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
15 Hb_000317_020 0.1040108625 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
16 Hb_001158_140 0.1041586164 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
17 Hb_000059_220 0.104808808 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
18 Hb_002518_140 0.1057370416 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
19 Hb_004109_190 0.1070327688 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
20 Hb_085781_010 0.1077845555 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_290 Hb_002686_290 Hb_000179_210 Hb_000179_210 Hb_002686_290--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_002686_290--Hb_000614_230 Hb_171900_080 Hb_171900_080 Hb_002686_290--Hb_171900_080 Hb_006816_140 Hb_006816_140 Hb_002686_290--Hb_006816_140 Hb_003266_130 Hb_003266_130 Hb_002686_290--Hb_003266_130 Hb_001085_170 Hb_001085_170 Hb_002686_290--Hb_001085_170 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_178968_110 Hb_178968_110 Hb_000179_210--Hb_178968_110 Hb_000179_210--Hb_001085_170 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000457_150 Hb_000457_150 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030 Hb_008695_210 Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_001329_300 Hb_001329_300 Hb_000614_230--Hb_001329_300 Hb_002006_090 Hb_002006_090 Hb_000614_230--Hb_002006_090 Hb_000614_230--Hb_003266_130 Hb_000614_230--Hb_001085_170 Hb_010795_010 Hb_010795_010 Hb_171900_080--Hb_010795_010 Hb_002518_140 Hb_002518_140 Hb_171900_080--Hb_002518_140 Hb_001277_330 Hb_001277_330 Hb_171900_080--Hb_001277_330 Hb_171900_080--Hb_003266_130 Hb_000123_120 Hb_000123_120 Hb_171900_080--Hb_000123_120 Hb_171900_080--Hb_178968_110 Hb_001158_140 Hb_001158_140 Hb_006816_140--Hb_001158_140 Hb_000200_050 Hb_000200_050 Hb_006816_140--Hb_000200_050 Hb_006816_140--Hb_003266_130 Hb_016901_010 Hb_016901_010 Hb_006816_140--Hb_016901_010 Hb_000997_400 Hb_000997_400 Hb_006816_140--Hb_000997_400 Hb_006816_140--Hb_000614_230 Hb_003266_130--Hb_178968_110 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_003266_130--Hb_001158_140 Hb_010172_050 Hb_010172_050 Hb_003266_130--Hb_010172_050 Hb_006922_030 Hb_006922_030 Hb_001085_170--Hb_006922_030 Hb_007558_140 Hb_007558_140 Hb_001085_170--Hb_007558_140 Hb_001085_170--Hb_002006_090 Hb_011918_080 Hb_011918_080 Hb_001085_170--Hb_011918_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09383 0.880881 0.27934 0.707805 2.47584 2.19417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80576 2.28203 3.49656 0.615072 1.3278

CAGE analysis