Hb_002686_320

Information

Type -
Description -
Location Contig2686: 241721-242656
Sequence    

Annotation

kegg
ID rcu:RCOM_1122500
description syntaxin, putative
nr
ID XP_002525472.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q42374
description Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1
trembl
ID B9SHK3
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1122500 PE=3 SV=1
Gene Ontology
ID GO:0005886
description syntaxin-related protein knolle

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28044: 241298-242822
cDNA
(Sanger)
(ID:Location)		 032_K09.ab1: 241298-242164

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_320 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_009113_020 0.0587166103 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
3 Hb_000977_190 0.0660353293 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000538_290 0.0677695014 - - hypothetical protein RCOM_0303940 [Ricinus communis]
5 Hb_009545_060 0.0786349934 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
6 Hb_000701_020 0.0795401688 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
7 Hb_006588_100 0.087819517 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000187_050 0.0878680179 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
9 Hb_006810_040 0.0914095416 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_005332_030 0.0945510675 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001971_040 0.09606228 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
12 Hb_001950_090 0.1003028394 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
13 Hb_089140_070 0.100386288 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
14 Hb_001699_270 0.1050594471 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
15 Hb_000345_450 0.1051456457 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
16 Hb_002836_110 0.106228044 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
17 Hb_005398_050 0.1078052608 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
18 Hb_003847_060 0.1089764427 - - syntaxin, putative [Ricinus communis]
19 Hb_000522_160 0.1091603714 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
20 Hb_000671_020 0.1099999929 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_320 Hb_002686_320 Hb_009113_020 Hb_009113_020 Hb_002686_320--Hb_009113_020 Hb_000977_190 Hb_000977_190 Hb_002686_320--Hb_000977_190 Hb_000538_290 Hb_000538_290 Hb_002686_320--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_002686_320--Hb_009545_060 Hb_000701_020 Hb_000701_020 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100 Hb_002836_110 Hb_002836_110 Hb_009113_020--Hb_002836_110 Hb_009113_020--Hb_000538_290 Hb_009113_020--Hb_009545_060 Hb_001856_210 Hb_001856_210 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050 Hb_005332_030 Hb_005332_030 Hb_000977_190--Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_000977_190--Hb_159809_040 Hb_000977_190--Hb_000538_290 Hb_000140_200 Hb_000140_200 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030 Hb_006810_040 Hb_006810_040 Hb_000538_290--Hb_006810_040 Hb_000538_290--Hb_000701_020 Hb_000187_050 Hb_000187_050 Hb_000538_290--Hb_000187_050 Hb_000962_060 Hb_000962_060 Hb_009545_060--Hb_000962_060 Hb_000035_230 Hb_000035_230 Hb_009545_060--Hb_000035_230 Hb_009545_060--Hb_000701_020 Hb_009545_060--Hb_000538_290 Hb_000345_450 Hb_000345_450 Hb_000701_020--Hb_000345_450 Hb_000701_020--Hb_006588_100 Hb_000701_020--Hb_000977_190 Hb_000671_020 Hb_000671_020 Hb_000701_020--Hb_000671_020 Hb_000480_060 Hb_000480_060 Hb_006588_100--Hb_000480_060 Hb_003656_080 Hb_003656_080 Hb_006588_100--Hb_003656_080 Hb_001699_270 Hb_001699_270 Hb_006588_100--Hb_001699_270 Hb_001950_090 Hb_001950_090 Hb_006588_100--Hb_001950_090 Hb_006588_100--Hb_000140_200 Hb_006588_100--Hb_000345_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144082 0.369366 31.7761 31.6232 0 0.0271559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.15184 3.79058

CAGE analysis