Hb_002686_410

Information

Type -
Description -
Location Contig2686: 318197-327022
Sequence    

Annotation

kegg
ID rcu:RCOM_1122770
description hypothetical protein
nr
ID XP_012089403.1
description PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
swissprot
ID Q9M8X2
description U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Arabidopsis thaliana GN=SNRNP48 PE=2 SV=1
trembl
ID B9SHL0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1122770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28054: 317929-318231 , PASA_asmbl_28055: 318307-326131 , PASA_asmbl_28056: 318309-319129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_410 0.0 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
2 Hb_009178_010 0.0625844546 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
3 Hb_005885_030 0.0633392299 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_000270_700 0.0637666097 - - PREDICTED: protease Do-like 9 [Populus euphratica]
5 Hb_000034_110 0.0704643339 - - sentrin/sumo-specific protease, putative [Ricinus communis]
6 Hb_009158_060 0.078859805 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
7 Hb_000030_140 0.0796433187 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
8 Hb_010775_010 0.0799296645 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
9 Hb_000172_360 0.0816477762 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
10 Hb_000418_050 0.0822010767 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
11 Hb_000260_760 0.0831478538 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
12 Hb_003925_060 0.0878593315 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
13 Hb_001277_340 0.0882565327 - - aldo/keto reductase, putative [Ricinus communis]
14 Hb_005305_130 0.0904735495 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
15 Hb_001133_090 0.0914467789 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
16 Hb_000956_040 0.091743671 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
17 Hb_003216_060 0.0931112051 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
18 Hb_004577_010 0.0948552519 - - PREDICTED: transmembrane protein 45A [Prunus mume]
19 Hb_004718_060 0.0949129662 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_013358_060 0.0958456056 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_410 Hb_002686_410 Hb_009178_010 Hb_009178_010 Hb_002686_410--Hb_009178_010 Hb_005885_030 Hb_005885_030 Hb_002686_410--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_002686_410--Hb_000270_700 Hb_000034_110 Hb_000034_110 Hb_002686_410--Hb_000034_110 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_000030_140 Hb_000030_140 Hb_002686_410--Hb_000030_140 Hb_004718_060 Hb_004718_060 Hb_009178_010--Hb_004718_060 Hb_000260_760 Hb_000260_760 Hb_009178_010--Hb_000260_760 Hb_009178_010--Hb_000034_110 Hb_009178_010--Hb_000030_140 Hb_000956_040 Hb_000956_040 Hb_009178_010--Hb_000956_040 Hb_010775_010 Hb_010775_010 Hb_005885_030--Hb_010775_010 Hb_005885_030--Hb_000270_700 Hb_002248_120 Hb_002248_120 Hb_005885_030--Hb_002248_120 Hb_006794_020 Hb_006794_020 Hb_005885_030--Hb_006794_020 Hb_001133_090 Hb_001133_090 Hb_005885_030--Hb_001133_090 Hb_000270_700--Hb_000034_110 Hb_000418_050 Hb_000418_050 Hb_000270_700--Hb_000418_050 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110 Hb_000034_110--Hb_000956_040 Hb_000034_110--Hb_000260_760 Hb_005403_010 Hb_005403_010 Hb_000034_110--Hb_005403_010 Hb_005305_130 Hb_005305_130 Hb_009158_060--Hb_005305_130 Hb_160608_010 Hb_160608_010 Hb_009158_060--Hb_160608_010 Hb_003661_010 Hb_003661_010 Hb_009158_060--Hb_003661_010 Hb_000172_360 Hb_000172_360 Hb_009158_060--Hb_000172_360 Hb_009158_060--Hb_000030_140 Hb_008054_040 Hb_008054_040 Hb_009158_060--Hb_008054_040 Hb_000030_140--Hb_000260_760 Hb_002461_020 Hb_002461_020 Hb_000030_140--Hb_002461_020 Hb_000996_020 Hb_000996_020 Hb_000030_140--Hb_000996_020 Hb_000035_100 Hb_000035_100 Hb_000030_140--Hb_000035_100 Hb_005333_140 Hb_005333_140 Hb_000030_140--Hb_005333_140 Hb_000110_350 Hb_000110_350 Hb_000030_140--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79837 6.46521 7.66076 4.01683 2.70319 1.64348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06269 1.22407 1.2507 3.53909 5.26945

CAGE analysis