Hb_002687_020

Information

Type -
Description -
Location Contig2687: 65383-66441
Sequence    

Annotation

kegg
ID rcu:RCOM_0600270
description hypothetical protein
nr
ID XP_002527143.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SII5
description Protein EXORDIUM-like 5 OS=Arabidopsis thaliana GN=EXL5 PE=2 SV=1
trembl
ID B9SMC4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0600270 PE=4 SV=1
Gene Ontology
ID GO:0008168
description protein exordium-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28057: 65320-66850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_069659_010 0.138865841 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000442_130 0.14771003 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003929_190 0.1652589754 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
5 Hb_000012_400 0.1724072993 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
6 Hb_030565_110 0.1748264653 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
7 Hb_002367_110 0.1773522098 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
8 Hb_005618_130 0.182479129 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_000236_160 0.1837294566 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
10 Hb_000029_440 0.1843502878 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
11 Hb_002072_010 0.1889980801 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001195_420 0.19151872 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
13 Hb_014497_040 0.1942604446 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
14 Hb_000562_100 0.1942948536 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
15 Hb_000244_260 0.1959908056 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
16 Hb_004409_030 0.196691652 - - Glutamine synthetase 1,4 [Theobroma cacao]
17 Hb_001619_030 0.1980345839 - - annexin, putative [Ricinus communis]
18 Hb_003371_190 0.1985479346 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
19 Hb_004746_010 0.2015056543 - - aldo/keto reductase, putative [Ricinus communis]
20 Hb_002681_120 0.2025766422 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]

Gene co-expression network

sample Hb_002687_020 Hb_002687_020 Hb_069659_010 Hb_069659_010 Hb_002687_020--Hb_069659_010 Hb_000442_130 Hb_000442_130 Hb_002687_020--Hb_000442_130 Hb_003929_190 Hb_003929_190 Hb_002687_020--Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_002687_020--Hb_000012_400 Hb_030565_110 Hb_030565_110 Hb_002687_020--Hb_030565_110 Hb_002367_110 Hb_002367_110 Hb_002687_020--Hb_002367_110 Hb_004409_030 Hb_004409_030 Hb_069659_010--Hb_004409_030 Hb_069659_010--Hb_000442_130 Hb_001832_210 Hb_001832_210 Hb_069659_010--Hb_001832_210 Hb_000000_110 Hb_000000_110 Hb_069659_010--Hb_000000_110 Hb_001004_120 Hb_001004_120 Hb_069659_010--Hb_001004_120 Hb_004657_030 Hb_004657_030 Hb_000442_130--Hb_004657_030 Hb_002093_050 Hb_002093_050 Hb_000442_130--Hb_002093_050 Hb_017559_010 Hb_017559_010 Hb_000442_130--Hb_017559_010 Hb_000220_080 Hb_000220_080 Hb_000442_130--Hb_000220_080 Hb_001619_030 Hb_001619_030 Hb_000442_130--Hb_001619_030 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070 Hb_003849_120 Hb_003849_120 Hb_000012_400--Hb_003849_120 Hb_010050_020 Hb_010050_020 Hb_000012_400--Hb_010050_020 Hb_010407_030 Hb_010407_030 Hb_000012_400--Hb_010407_030 Hb_000562_100 Hb_000562_100 Hb_000012_400--Hb_000562_100 Hb_001195_310 Hb_001195_310 Hb_000012_400--Hb_001195_310 Hb_001009_150 Hb_001009_150 Hb_000012_400--Hb_001009_150 Hb_002072_010 Hb_002072_010 Hb_030565_110--Hb_002072_010 Hb_003371_190 Hb_003371_190 Hb_030565_110--Hb_003371_190 Hb_000003_310 Hb_000003_310 Hb_030565_110--Hb_000003_310 Hb_000244_260 Hb_000244_260 Hb_030565_110--Hb_000244_260 Hb_000254_070 Hb_000254_070 Hb_030565_110--Hb_000254_070 Hb_030565_110--Hb_002367_110 Hb_002367_110--Hb_002072_010 Hb_031931_020 Hb_031931_020 Hb_002367_110--Hb_031931_020 Hb_002367_110--Hb_000003_310 Hb_023765_010 Hb_023765_010 Hb_002367_110--Hb_023765_010 Hb_000674_010 Hb_000674_010 Hb_002367_110--Hb_000674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.143 8.67945 12.0948 44.3578 10.5452 4.5084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.613695 0.668345 0.411551 24.7836 16.5485

CAGE analysis