Hb_002687_050

Information

Type -
Description -
Location Contig2687: 99348-102152
Sequence    

Annotation

kegg
ID cit:102611758
description uncharacterized LOC102611758
nr
ID XP_012462437.1
description PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A068U827
description Coffea canephora DH200=94 genomic scaffold, scaffold_11 OS=Coffea canephora GN=GSCOC_T00016212001 PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_050 0.0 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
2 Hb_008725_200 0.1137936381 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
3 Hb_103873_010 0.1434287093 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
4 Hb_134789_010 0.1451584356 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
5 Hb_006602_010 0.147159359 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
6 Hb_004735_010 0.1530375351 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
7 Hb_006198_050 0.1530881295 - - protein with unknown function [Ricinus communis]
8 Hb_012725_090 0.1532832395 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
9 Hb_049415_020 0.1580019702 - - -
10 Hb_002248_050 0.161248353 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
11 Hb_002038_060 0.165886072 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
12 Hb_001902_050 0.1669880367 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
13 Hb_002027_330 0.1673961457 - - -
14 Hb_006602_020 0.1679951788 - - unknown [Medicago truncatula]
15 Hb_001999_060 0.1730755701 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
16 Hb_001476_100 0.1744237202 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005539_290 0.1769878573 - - unknown [Lotus japonicus]
18 Hb_014834_120 0.1771214295 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
19 Hb_000907_100 0.1780735658 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
20 Hb_002301_020 0.1811011222 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_002687_050 Hb_002687_050 Hb_008725_200 Hb_008725_200 Hb_002687_050--Hb_008725_200 Hb_103873_010 Hb_103873_010 Hb_002687_050--Hb_103873_010 Hb_134789_010 Hb_134789_010 Hb_002687_050--Hb_134789_010 Hb_006602_010 Hb_006602_010 Hb_002687_050--Hb_006602_010 Hb_004735_010 Hb_004735_010 Hb_002687_050--Hb_004735_010 Hb_006198_050 Hb_006198_050 Hb_002687_050--Hb_006198_050 Hb_008725_200--Hb_134789_010 Hb_033448_010 Hb_033448_010 Hb_008725_200--Hb_033448_010 Hb_000032_540 Hb_000032_540 Hb_008725_200--Hb_000032_540 Hb_049415_020 Hb_049415_020 Hb_008725_200--Hb_049415_020 Hb_000144_090 Hb_000144_090 Hb_008725_200--Hb_000144_090 Hb_002038_060 Hb_002038_060 Hb_103873_010--Hb_002038_060 Hb_002248_050 Hb_002248_050 Hb_103873_010--Hb_002248_050 Hb_002301_320 Hb_002301_320 Hb_103873_010--Hb_002301_320 Hb_014067_010 Hb_014067_010 Hb_103873_010--Hb_014067_010 Hb_001999_060 Hb_001999_060 Hb_103873_010--Hb_001999_060 Hb_026048_100 Hb_026048_100 Hb_103873_010--Hb_026048_100 Hb_006787_040 Hb_006787_040 Hb_134789_010--Hb_006787_040 Hb_115919_020 Hb_115919_020 Hb_134789_010--Hb_115919_020 Hb_000442_030 Hb_000442_030 Hb_134789_010--Hb_000442_030 Hb_007317_220 Hb_007317_220 Hb_134789_010--Hb_007317_220 Hb_000849_040 Hb_000849_040 Hb_134789_010--Hb_000849_040 Hb_008408_030 Hb_008408_030 Hb_134789_010--Hb_008408_030 Hb_006602_020 Hb_006602_020 Hb_006602_010--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_005779_100 Hb_005779_100 Hb_006602_010--Hb_005779_100 Hb_000700_090 Hb_000700_090 Hb_006602_010--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_006602_010--Hb_005539_290 Hb_006602_010--Hb_004735_010 Hb_004735_010--Hb_000700_090 Hb_001902_050 Hb_001902_050 Hb_004735_010--Hb_001902_050 Hb_004735_010--Hb_006602_020 Hb_000671_100 Hb_000671_100 Hb_004735_010--Hb_000671_100 Hb_000442_160 Hb_000442_160 Hb_004735_010--Hb_000442_160 Hb_006198_050--Hb_004735_010 Hb_000457_160 Hb_000457_160 Hb_006198_050--Hb_000457_160 Hb_000907_100 Hb_000907_100 Hb_006198_050--Hb_000907_100 Hb_019613_020 Hb_019613_020 Hb_006198_050--Hb_019613_020 Hb_035524_030 Hb_035524_030 Hb_006198_050--Hb_035524_030 Hb_006198_050--Hb_006602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2048 0.331355 0.778453 6.56598 19.3107 73.9603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3429 27.5277 42.3895 4.18657 0.488381

CAGE analysis