Hb_002687_070

Information

Type -
Description -
Location Contig2687: 126621-127547
Sequence    

Annotation

kegg
ID gmx:102665240
description uncharacterized LOC102665240
nr
ID ACB28472.1
description polyprotein [Ananas comosus]
swissprot
ID -
description -
trembl
ID B4YF15
description Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 048_L14r.ab1: 119756-132426

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_070 0.0 - - polyprotein [Ananas comosus]
2 Hb_171685_020 0.1433107438 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006040_050 0.1652372649 - - conserved hypothetical protein [Ricinus communis]
4 Hb_144027_010 0.1673935743 - - -
5 Hb_013420_090 0.1689305719 - - BnaCnng13090D [Brassica napus]
6 Hb_001383_080 0.1717759698 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
7 Hb_001250_030 0.1777655546 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002482_050 0.1794622452 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
9 Hb_017640_010 0.1810184001 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
10 Hb_013420_010 0.1825388447 - - conserved hypothetical protein [Ricinus communis]
11 Hb_144838_010 0.1836423808 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
12 Hb_102602_020 0.1845255522 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
13 Hb_007575_010 0.1862613849 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
14 Hb_002598_030 0.1938245235 - - -
15 Hb_003169_040 0.1952199538 - - -
16 Hb_101733_010 0.1961800755 - - conserved hypothetical protein [Ricinus communis]
17 Hb_047923_030 0.1970840243 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
18 Hb_072212_020 0.1975581274 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
19 Hb_000432_020 0.1990294907 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
20 Hb_003900_040 0.1992519683 - - hypothetical protein [Lotus japonicus]

Gene co-expression network

sample Hb_002687_070 Hb_002687_070 Hb_171685_020 Hb_171685_020 Hb_002687_070--Hb_171685_020 Hb_006040_050 Hb_006040_050 Hb_002687_070--Hb_006040_050 Hb_144027_010 Hb_144027_010 Hb_002687_070--Hb_144027_010 Hb_013420_090 Hb_013420_090 Hb_002687_070--Hb_013420_090 Hb_001383_080 Hb_001383_080 Hb_002687_070--Hb_001383_080 Hb_001250_030 Hb_001250_030 Hb_002687_070--Hb_001250_030 Hb_171685_020--Hb_006040_050 Hb_013420_120 Hb_013420_120 Hb_171685_020--Hb_013420_120 Hb_171685_020--Hb_013420_090 Hb_171685_040 Hb_171685_040 Hb_171685_020--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_171685_020--Hb_013420_010 Hb_005742_010 Hb_005742_010 Hb_006040_050--Hb_005742_010 Hb_006040_050--Hb_171685_040 Hb_002482_050 Hb_002482_050 Hb_006040_050--Hb_002482_050 Hb_006040_050--Hb_013420_120 Hb_004899_210 Hb_004899_210 Hb_144027_010--Hb_004899_210 Hb_003900_040 Hb_003900_040 Hb_144027_010--Hb_003900_040 Hb_117001_010 Hb_117001_010 Hb_144027_010--Hb_117001_010 Hb_144027_010--Hb_001383_080 Hb_017640_010 Hb_017640_010 Hb_144027_010--Hb_017640_010 Hb_003169_040 Hb_003169_040 Hb_144027_010--Hb_003169_040 Hb_012163_050 Hb_012163_050 Hb_013420_090--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_013420_090--Hb_013420_020 Hb_013420_050 Hb_013420_050 Hb_013420_090--Hb_013420_050 Hb_000405_010 Hb_000405_010 Hb_013420_090--Hb_000405_010 Hb_027357_010 Hb_027357_010 Hb_013420_090--Hb_027357_010 Hb_042463_020 Hb_042463_020 Hb_013420_090--Hb_042463_020 Hb_003414_040 Hb_003414_040 Hb_001383_080--Hb_003414_040 Hb_001383_080--Hb_001250_030 Hb_019654_170 Hb_019654_170 Hb_001383_080--Hb_019654_170 Hb_000432_020 Hb_000432_020 Hb_001383_080--Hb_000432_020 Hb_000346_050 Hb_000346_050 Hb_001383_080--Hb_000346_050 Hb_001383_080--Hb_003900_040 Hb_093388_010 Hb_093388_010 Hb_001250_030--Hb_093388_010 Hb_029510_060 Hb_029510_060 Hb_001250_030--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_001250_030--Hb_023738_010 Hb_003311_020 Hb_003311_020 Hb_001250_030--Hb_003311_020 Hb_001250_030--Hb_003414_040 Hb_001250_030--Hb_000432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.222704 0.0199538 0.0223054 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0828312 0.109666 1.28803

CAGE analysis