Hb_002687_080

Information

Type -
Description -
Location Contig2687: 130803-132414
Sequence    

Annotation

kegg
ID cic:CICLE_v10017231mg
description hypothetical protein
nr
ID KDP46747.1
description hypothetical protein JCGZ_06535 [Jatropha curcas]
swissprot
ID Q94C60
description Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1
trembl
ID A0A067LEF4
description Transcription elongation factor SPT4 homolog OS=Jatropha curcas GN=JCGZ_06535 PE=3 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor spt4 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28064: 119735-132584 , PASA_asmbl_28065: 119735-132449
cDNA
(Sanger)
(ID:Location)		 048_L14.ab1: 119756-132532

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_080 0.0 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
2 Hb_000416_070 0.1240585549 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
3 Hb_140291_010 0.1261846067 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
4 Hb_152554_010 0.1292017097 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
5 Hb_099878_050 0.1311309206 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
6 Hb_000327_290 0.1359543579 - - Histone H4 [Triticum urartu]
7 Hb_000136_180 0.1371845524 - - ribosomal protein S28, putative [Ricinus communis]
8 Hb_001769_080 0.1389668585 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
9 Hb_001623_290 0.1408791662 - - unknown [Populus trichocarpa]
10 Hb_038237_010 0.1409363774 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
11 Hb_005367_010 0.1411208998 - - -
12 Hb_184570_010 0.1414291385 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
13 Hb_001377_180 0.1416346711 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
14 Hb_000676_080 0.1450401184 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
15 Hb_076875_020 0.1451380643 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_005714_130 0.1469721659 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
17 Hb_003925_070 0.1469875704 - - ATOZI1, putative [Ricinus communis]
18 Hb_066913_010 0.1475627879 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
19 Hb_001623_300 0.1491937993 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
20 Hb_002192_090 0.1507479133 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]

Gene co-expression network

sample Hb_002687_080 Hb_002687_080 Hb_000416_070 Hb_000416_070 Hb_002687_080--Hb_000416_070 Hb_140291_010 Hb_140291_010 Hb_002687_080--Hb_140291_010 Hb_152554_010 Hb_152554_010 Hb_002687_080--Hb_152554_010 Hb_099878_050 Hb_099878_050 Hb_002687_080--Hb_099878_050 Hb_000327_290 Hb_000327_290 Hb_002687_080--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_002687_080--Hb_000136_180 Hb_184570_010 Hb_184570_010 Hb_000416_070--Hb_184570_010 Hb_000069_160 Hb_000069_160 Hb_000416_070--Hb_000069_160 Hb_000416_070--Hb_140291_010 Hb_012760_130 Hb_012760_130 Hb_000416_070--Hb_012760_130 Hb_004934_070 Hb_004934_070 Hb_000416_070--Hb_004934_070 Hb_096490_020 Hb_096490_020 Hb_140291_010--Hb_096490_020 Hb_041392_010 Hb_041392_010 Hb_140291_010--Hb_041392_010 Hb_002007_180 Hb_002007_180 Hb_140291_010--Hb_002007_180 Hb_000812_040 Hb_000812_040 Hb_140291_010--Hb_000812_040 Hb_003656_140 Hb_003656_140 Hb_140291_010--Hb_003656_140 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_006487_060 Hb_006487_060 Hb_152554_010--Hb_006487_060 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_000176_120 Hb_000176_120 Hb_152554_010--Hb_000176_120 Hb_106415_010 Hb_106415_010 Hb_099878_050--Hb_106415_010 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_010504_030 Hb_010504_030 Hb_000327_290--Hb_010504_030 Hb_007123_060 Hb_007123_060 Hb_000327_290--Hb_007123_060 Hb_082407_010 Hb_082407_010 Hb_000327_290--Hb_082407_010 Hb_112047_010 Hb_112047_010 Hb_000327_290--Hb_112047_010 Hb_136731_010 Hb_136731_010 Hb_000327_290--Hb_136731_010 Hb_000136_180--Hb_007188_020 Hb_000136_180--Hb_112047_010 Hb_000015_070 Hb_000015_070 Hb_000136_180--Hb_000015_070 Hb_076875_020 Hb_076875_020 Hb_000136_180--Hb_076875_020 Hb_001623_290 Hb_001623_290 Hb_000136_180--Hb_001623_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.78 69.1887 89.1374 294.206 98.8154 392.963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
166.186 156.555 43.6027 102.222 17.2988

CAGE analysis