Hb_002687_110

Information

Type -
Description -
Location Contig2687: 149073-157536
Sequence    

Annotation

kegg
ID rcu:RCOM_1454530
description WD-repeat protein, putative
nr
ID XP_012068544.1
description PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
swissprot
ID Q5SP67
description WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1
trembl
ID B9RGK0
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1454530 PE=4 SV=1
Gene Ontology
ID GO:0007062
description wd repeat-containing protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28067: 149090-157138 , PASA_asmbl_28068: 152869-153001 , PASA_asmbl_28071: 158008-161839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_110 0.0 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
2 Hb_000431_010 0.0592768 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
3 Hb_004738_040 0.0628531033 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
4 Hb_000080_190 0.0659152251 - - -
5 Hb_001277_330 0.0698692328 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
6 Hb_000409_020 0.0723677784 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
7 Hb_003943_040 0.0731886984 - - DNA binding protein, putative [Ricinus communis]
8 Hb_004109_190 0.0738230325 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
9 Hb_183086_060 0.0738449004 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
10 Hb_005625_020 0.0746335487 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
11 Hb_000029_020 0.0784922897 - - Vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_009486_130 0.0796373586 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
13 Hb_011316_040 0.0806407949 - - peptidase, putative [Ricinus communis]
14 Hb_000648_110 0.0815666533 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
15 Hb_000510_320 0.0832990747 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
16 Hb_002769_050 0.083751745 - - PREDICTED: endophilin-A1 [Jatropha curcas]
17 Hb_000115_330 0.0850010046 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
18 Hb_000898_040 0.085348322 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_008695_210 0.0881516413 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
20 Hb_002005_020 0.0889767981 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002687_110 Hb_002687_110 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_031862_110 Hb_031862_110 Hb_000431_010--Hb_031862_110 Hb_009486_130 Hb_009486_130 Hb_000431_010--Hb_009486_130 Hb_008300_010 Hb_008300_010 Hb_000431_010--Hb_008300_010 Hb_000431_010--Hb_001277_330 Hb_001140_060 Hb_001140_060 Hb_000431_010--Hb_001140_060 Hb_000510_320 Hb_000510_320 Hb_004738_040--Hb_000510_320 Hb_004738_040--Hb_001277_330 Hb_005625_020 Hb_005625_020 Hb_004738_040--Hb_005625_020 Hb_004738_040--Hb_000409_020 Hb_004738_040--Hb_000431_010 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000080_190--Hb_000409_020 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000409_020--Hb_000898_040 Hb_004109_090 Hb_004109_090 Hb_000409_020--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_000409_020--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110 Hb_003943_040--Hb_004738_040 Hb_003943_040--Hb_001277_330 Hb_003943_040--Hb_000409_020 Hb_003943_040--Hb_011316_040 Hb_004724_420 Hb_004724_420 Hb_003943_040--Hb_004724_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.407 10.6223 14.2016 26.1951 41.8425 46.8622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.6968 49.2168 84.4778 24.3434 21.6806

CAGE analysis