Hb_002687_120

Information

Type -
Description -
Location Contig2687: 157926-161927
Sequence    

Annotation

kegg
ID rcu:RCOM_0817880
description lipoic acid synthetase, putative
nr
ID XP_012068555.1
description PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
swissprot
ID B9RX57
description Lipoyl synthase, chloroplastic OS=Ricinus communis GN=LIP1P PE=3 SV=1
trembl
ID A0A067KWC4
description Lipoyl synthase, chloroplastic OS=Jatropha curcas GN=LIP1P PE=3 SV=1
Gene Ontology
ID GO:0009507
description lipoyl chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28070: 158660-160757 , PASA_asmbl_28071: 158008-161839 , PASA_asmbl_28072: 161046-161764 , PASA_asmbl_28074: 162495-166494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_120 0.0 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
2 Hb_000890_130 0.0643169721 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
3 Hb_003119_060 0.0728973356 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
4 Hb_003266_030 0.0836049243 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
5 Hb_000028_520 0.0870715738 - - hypothetical protein L484_025125 [Morus notabilis]
6 Hb_000721_030 0.0892315492 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
7 Hb_006132_090 0.0894645598 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
8 Hb_000062_330 0.0925470551 - - unknown [Lotus japonicus]
9 Hb_002304_150 0.0936517005 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
10 Hb_000003_780 0.0942332532 - - hexokinase [Manihot esculenta]
11 Hb_000774_020 0.0963590668 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
12 Hb_003363_070 0.0975050256 - - -
13 Hb_005167_010 0.0997828756 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
14 Hb_000684_030 0.1003123532 - - syntaxin, putative [Ricinus communis]
15 Hb_003605_020 0.1012252625 - - exocyst complex component sec6, putative [Ricinus communis]
16 Hb_004452_120 0.1012773464 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
17 Hb_000260_470 0.1014056447 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
18 Hb_004965_110 0.1021085579 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
19 Hb_006570_160 0.1022769628 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
20 Hb_001195_060 0.1025881372 - - Protein yrdA, putative [Ricinus communis]

Gene co-expression network

sample Hb_002687_120 Hb_002687_120 Hb_000890_130 Hb_000890_130 Hb_002687_120--Hb_000890_130 Hb_003119_060 Hb_003119_060 Hb_002687_120--Hb_003119_060 Hb_003266_030 Hb_003266_030 Hb_002687_120--Hb_003266_030 Hb_000028_520 Hb_000028_520 Hb_002687_120--Hb_000028_520 Hb_000721_030 Hb_000721_030 Hb_002687_120--Hb_000721_030 Hb_006132_090 Hb_006132_090 Hb_002687_120--Hb_006132_090 Hb_000890_130--Hb_003119_060 Hb_002686_080 Hb_002686_080 Hb_000890_130--Hb_002686_080 Hb_000890_130--Hb_000028_520 Hb_000270_680 Hb_000270_680 Hb_000890_130--Hb_000270_680 Hb_002304_150 Hb_002304_150 Hb_000890_130--Hb_002304_150 Hb_003119_060--Hb_000028_520 Hb_003119_060--Hb_006132_090 Hb_002157_120 Hb_002157_120 Hb_003119_060--Hb_002157_120 Hb_000774_020 Hb_000774_020 Hb_003119_060--Hb_000774_020 Hb_007904_230 Hb_007904_230 Hb_003266_030--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_003266_030--Hb_011671_260 Hb_004965_110 Hb_004965_110 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080 Hb_000028_520--Hb_002157_120 Hb_018790_020 Hb_018790_020 Hb_000028_520--Hb_018790_020 Hb_000061_180 Hb_000061_180 Hb_000028_520--Hb_000061_180 Hb_001025_120 Hb_001025_120 Hb_000028_520--Hb_001025_120 Hb_000058_130 Hb_000058_130 Hb_000028_520--Hb_000058_130 Hb_133702_010 Hb_133702_010 Hb_000721_030--Hb_133702_010 Hb_004452_120 Hb_004452_120 Hb_000721_030--Hb_004452_120 Hb_005800_030 Hb_005800_030 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_012573_050 Hb_012573_050 Hb_000721_030--Hb_012573_050 Hb_001504_030 Hb_001504_030 Hb_000721_030--Hb_001504_030 Hb_005167_010 Hb_005167_010 Hb_006132_090--Hb_005167_010 Hb_001900_140 Hb_001900_140 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76888 4.12547 24.4839 15.4318 6.55437 7.60171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8942 10.4705 12.7327 10.5615 14.1318

CAGE analysis