Hb_002687_140

Information

Type -
Description -
Location Contig2687: 167051-174775
Sequence    

Annotation

kegg
ID egr:104454037
description mitochondrial intermembrane space import and assembly protein 40
nr
ID KDP40464.1
description hypothetical protein JCGZ_24463 [Jatropha curcas]
swissprot
ID Q4P8D2
description Mitochondrial intermembrane space import and assembly protein 40 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MIA40 PE=3 SV=1
trembl
ID A0A067L8L9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24463 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial intermembrane space import and assembly protein 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28075: 167093-174331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_140 0.0 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
2 Hb_001348_070 0.0562343074 - - Uncharacterized protein isoform 1 [Theobroma cacao]
3 Hb_003752_080 0.0752112249 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
4 Hb_000808_250 0.076075758 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
5 Hb_003849_060 0.0772840464 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
6 Hb_007007_050 0.0783901748 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
7 Hb_001352_090 0.0800430672 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
8 Hb_008887_050 0.0891453904 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
9 Hb_000676_050 0.0894692261 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
10 Hb_004450_060 0.0908600022 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
11 Hb_019962_030 0.0917694663 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
12 Hb_003142_070 0.0922807045 - - hypothetical protein F383_14657 [Gossypium arboreum]
13 Hb_006623_020 0.0947376455 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
14 Hb_022250_030 0.0951958736 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002292_010 0.0956460765 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
16 Hb_001427_050 0.096058007 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
17 Hb_003126_040 0.0985913039 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000141_060 0.0991956265 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
19 Hb_031939_010 0.1007395497 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
20 Hb_003467_010 0.1007397664 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002687_140 Hb_002687_140 Hb_001348_070 Hb_001348_070 Hb_002687_140--Hb_001348_070 Hb_003752_080 Hb_003752_080 Hb_002687_140--Hb_003752_080 Hb_000808_250 Hb_000808_250 Hb_002687_140--Hb_000808_250 Hb_003849_060 Hb_003849_060 Hb_002687_140--Hb_003849_060 Hb_007007_050 Hb_007007_050 Hb_002687_140--Hb_007007_050 Hb_001352_090 Hb_001352_090 Hb_002687_140--Hb_001352_090 Hb_007154_020 Hb_007154_020 Hb_001348_070--Hb_007154_020 Hb_001348_070--Hb_003752_080 Hb_001564_130 Hb_001564_130 Hb_001348_070--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_001348_070--Hb_000670_020 Hb_002233_150 Hb_002233_150 Hb_001348_070--Hb_002233_150 Hb_003752_080--Hb_002233_150 Hb_001047_100 Hb_001047_100 Hb_003752_080--Hb_001047_100 Hb_002495_070 Hb_002495_070 Hb_003752_080--Hb_002495_070 Hb_001405_120 Hb_001405_120 Hb_003752_080--Hb_001405_120 Hb_006623_020 Hb_006623_020 Hb_000808_250--Hb_006623_020 Hb_000808_250--Hb_003849_060 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003467_010 Hb_003467_010 Hb_003849_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_003849_060--Hb_011848_010 Hb_000394_190 Hb_000394_190 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_002292_010 Hb_002292_010 Hb_007007_050--Hb_002292_010 Hb_019962_030 Hb_019962_030 Hb_007007_050--Hb_019962_030 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_007007_050--Hb_000359_330 Hb_001352_090--Hb_001348_070 Hb_003142_070 Hb_003142_070 Hb_001352_090--Hb_003142_070 Hb_001352_090--Hb_006623_020 Hb_001352_090--Hb_000808_250 Hb_000014_170 Hb_000014_170 Hb_001352_090--Hb_000014_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7983 12.2223 18.5595 4.64513 32.451 20.6793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.038 23.5715 8.88674 8.752 5.02578

CAGE analysis