Hb_002687_160

Information

Type -
Description -
Location Contig2687: 175373-183686
Sequence    

Annotation

kegg
ID rcu:RCOM_1454230
description hypothetical protein
nr
ID XP_012083897.1
description PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15018 PE=4 SV=1
Gene Ontology
ID GO:0010228
description gb: isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28077: 175469-179002 , PASA_asmbl_28078: 179087-183365 , PASA_asmbl_28079: 183098-183227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_160 0.0 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
2 Hb_002627_040 0.0894133362 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
3 Hb_006829_060 0.0922688748 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
4 Hb_000979_130 0.1023821267 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
5 Hb_000025_540 0.1040864741 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
6 Hb_008725_270 0.1058971563 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
7 Hb_014497_010 0.106451721 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
8 Hb_005694_060 0.1074696216 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
9 Hb_000585_110 0.1091037655 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
10 Hb_000012_080 0.1122140105 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
11 Hb_000116_250 0.1127955304 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
12 Hb_005074_040 0.1140790863 - - ATP binding protein, putative [Ricinus communis]
13 Hb_009296_020 0.1149447058 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
14 Hb_003680_220 0.1156059789 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
15 Hb_001117_110 0.1173805879 - - PREDICTED: dynamin-2A [Jatropha curcas]
16 Hb_032631_070 0.117935244 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
17 Hb_005686_130 0.1182222467 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
18 Hb_004326_010 0.1185876883 - - cationic amino acid transporter, putative [Ricinus communis]
19 Hb_138585_030 0.1189789373 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
20 Hb_019654_020 0.1247377925 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_002687_160 Hb_002687_160 Hb_002627_040 Hb_002627_040 Hb_002687_160--Hb_002627_040 Hb_006829_060 Hb_006829_060 Hb_002687_160--Hb_006829_060 Hb_000979_130 Hb_000979_130 Hb_002687_160--Hb_000979_130 Hb_000025_540 Hb_000025_540 Hb_002687_160--Hb_000025_540 Hb_008725_270 Hb_008725_270 Hb_002687_160--Hb_008725_270 Hb_014497_010 Hb_014497_010 Hb_002687_160--Hb_014497_010 Hb_003680_220 Hb_003680_220 Hb_002627_040--Hb_003680_220 Hb_002627_040--Hb_008725_270 Hb_002627_040--Hb_000025_540 Hb_138585_030 Hb_138585_030 Hb_002627_040--Hb_138585_030 Hb_070624_010 Hb_070624_010 Hb_002627_040--Hb_070624_010 Hb_000012_080 Hb_000012_080 Hb_006829_060--Hb_000012_080 Hb_006829_060--Hb_000979_130 Hb_001976_030 Hb_001976_030 Hb_006829_060--Hb_001976_030 Hb_000057_110 Hb_000057_110 Hb_006829_060--Hb_000057_110 Hb_019654_020 Hb_019654_020 Hb_006829_060--Hb_019654_020 Hb_005694_060 Hb_005694_060 Hb_000979_130--Hb_005694_060 Hb_000260_510 Hb_000260_510 Hb_000979_130--Hb_000260_510 Hb_000367_180 Hb_000367_180 Hb_000979_130--Hb_000367_180 Hb_015884_020 Hb_015884_020 Hb_000979_130--Hb_015884_020 Hb_000979_130--Hb_019654_020 Hb_000395_110 Hb_000395_110 Hb_000979_130--Hb_000395_110 Hb_003994_080 Hb_003994_080 Hb_000025_540--Hb_003994_080 Hb_002783_190 Hb_002783_190 Hb_000025_540--Hb_002783_190 Hb_000025_540--Hb_138585_030 Hb_000025_540--Hb_014497_010 Hb_008725_270--Hb_003680_220 Hb_000007_090 Hb_000007_090 Hb_008725_270--Hb_000007_090 Hb_003929_180 Hb_003929_180 Hb_008725_270--Hb_003929_180 Hb_002687_200 Hb_002687_200 Hb_008725_270--Hb_002687_200 Hb_000926_060 Hb_000926_060 Hb_008725_270--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_008725_270--Hb_000500_220 Hb_005074_040 Hb_005074_040 Hb_014497_010--Hb_005074_040 Hb_008025_010 Hb_008025_010 Hb_014497_010--Hb_008025_010 Hb_000689_050 Hb_000689_050 Hb_014497_010--Hb_000689_050 Hb_002942_230 Hb_002942_230 Hb_014497_010--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_014497_010--Hb_001411_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.539644 1.60841 5.9147 5.59697 1.14064 0.743352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.784221 1.26223 2.48608 3.20254 6.0804

CAGE analysis