Hb_002687_170

Information

Type -
Description -
Location Contig2687: 184023-189022
Sequence    

Annotation

kegg
ID tcc:TCM_007650
description D111/G-patch domain-containing protein
nr
ID XP_012068559.1
description PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
swissprot
ID A2A6A1
description G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=1 SV=1
trembl
ID A0A067L7I3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24464 PE=4 SV=1
Gene Ontology
ID GO:0003676
description g patch domain and ankyrin repeat-containing protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28081: 184025-188969 , PASA_asmbl_28082: 189649-190169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_170 0.0 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
2 Hb_001158_230 0.0543556988 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
3 Hb_004459_040 0.0653900702 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
4 Hb_005181_030 0.0761886217 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
5 Hb_005474_060 0.0774167319 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
6 Hb_009421_040 0.0774701124 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
7 Hb_003994_040 0.0815496594 - - -
8 Hb_000265_050 0.0829655649 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
9 Hb_003053_030 0.0831525837 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
10 Hb_003893_050 0.0848590471 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
11 Hb_007416_020 0.0850531219 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
12 Hb_076626_010 0.0860419834 - - conserved hypothetical protein [Ricinus communis]
13 Hb_033153_060 0.0870328449 - - Transcription elongation factor, putative [Ricinus communis]
14 Hb_002431_050 0.0873970111 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
15 Hb_001634_040 0.0878673776 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
16 Hb_000933_160 0.0881008701 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
17 Hb_001424_020 0.0893232864 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
18 Hb_006541_010 0.0900338876 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
19 Hb_000062_390 0.0901183173 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
20 Hb_007944_040 0.0910161494 - - 60S ribosomal protein L18aB [Hevea brasiliensis]

Gene co-expression network

sample Hb_002687_170 Hb_002687_170 Hb_001158_230 Hb_001158_230 Hb_002687_170--Hb_001158_230 Hb_004459_040 Hb_004459_040 Hb_002687_170--Hb_004459_040 Hb_005181_030 Hb_005181_030 Hb_002687_170--Hb_005181_030 Hb_005474_060 Hb_005474_060 Hb_002687_170--Hb_005474_060 Hb_009421_040 Hb_009421_040 Hb_002687_170--Hb_009421_040 Hb_003994_040 Hb_003994_040 Hb_002687_170--Hb_003994_040 Hb_019516_100 Hb_019516_100 Hb_001158_230--Hb_019516_100 Hb_000933_160 Hb_000933_160 Hb_001158_230--Hb_000933_160 Hb_076626_010 Hb_076626_010 Hb_001158_230--Hb_076626_010 Hb_007944_040 Hb_007944_040 Hb_001158_230--Hb_007944_040 Hb_001158_230--Hb_005181_030 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_001279_360 Hb_001279_360 Hb_005181_030--Hb_001279_360 Hb_005181_030--Hb_004459_040 Hb_094608_010 Hb_094608_010 Hb_005181_030--Hb_094608_010 Hb_004157_030 Hb_004157_030 Hb_005181_030--Hb_004157_030 Hb_001085_120 Hb_001085_120 Hb_005181_030--Hb_001085_120 Hb_005474_060--Hb_003994_040 Hb_000905_180 Hb_000905_180 Hb_005474_060--Hb_000905_180 Hb_011644_030 Hb_011644_030 Hb_005474_060--Hb_011644_030 Hb_003053_030 Hb_003053_030 Hb_005474_060--Hb_003053_030 Hb_000181_300 Hb_000181_300 Hb_005474_060--Hb_000181_300 Hb_005357_130 Hb_005357_130 Hb_009421_040--Hb_005357_130 Hb_000086_550 Hb_000086_550 Hb_009421_040--Hb_000086_550 Hb_001117_090 Hb_001117_090 Hb_009421_040--Hb_001117_090 Hb_003623_050 Hb_003623_050 Hb_009421_040--Hb_003623_050 Hb_005211_190 Hb_005211_190 Hb_009421_040--Hb_005211_190 Hb_003455_040 Hb_003455_040 Hb_003994_040--Hb_003455_040 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_003994_040--Hb_003053_030 Hb_000173_220 Hb_000173_220 Hb_003994_040--Hb_000173_220 Hb_003994_040--Hb_011644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6392 6.1004 14.5659 16.6796 16.0933 27.8146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.0231 98.5799 37.5929 17.3509 23.5307

CAGE analysis