Hb_002693_030

Information

Type -
Description -
Location Contig2693: 64223-69548
Sequence    

Annotation

kegg
ID rcu:RCOM_0854900
description voltage-dependent anion-selective channel, putative
nr
ID XP_012082894.1
description PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
swissprot
ID P42055
description Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2
trembl
ID A0A067LDZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09722 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin of 34 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28098: 64267-69483 , PASA_asmbl_28099: 64326-65065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002693_030 0.0 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
2 Hb_006637_030 0.0660277639 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
3 Hb_007850_030 0.0676875591 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
4 Hb_000330_090 0.0795121116 - - ornithine carbamoyltransferase, putative [Ricinus communis]
5 Hb_053709_050 0.0799097924 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_002534_130 0.0827480966 - - membrane associated ring finger 1,8, putative [Ricinus communis]
7 Hb_026198_010 0.0849745124 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
8 Hb_003498_100 0.0902414465 - - component of oligomeric golgi complex, putative [Ricinus communis]
9 Hb_081599_010 0.0929014347 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001147_050 0.093300604 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
11 Hb_000926_200 0.0969732904 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
12 Hb_001633_090 0.0977922419 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
13 Hb_004994_180 0.0995823685 - - malic enzyme, putative [Ricinus communis]
14 Hb_000193_260 0.0997430451 - - PREDICTED: protein NEN1 [Jatropha curcas]
15 Hb_000120_890 0.1014756291 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
16 Hb_005686_130 0.1022163017 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
17 Hb_001269_130 0.1026093889 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
18 Hb_001205_080 0.1036735566 - - Protein FAM96B, putative [Ricinus communis]
19 Hb_000723_230 0.1037687433 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
20 Hb_001269_620 0.1048887632 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002693_030 Hb_002693_030 Hb_006637_030 Hb_006637_030 Hb_002693_030--Hb_006637_030 Hb_007850_030 Hb_007850_030 Hb_002693_030--Hb_007850_030 Hb_000330_090 Hb_000330_090 Hb_002693_030--Hb_000330_090 Hb_053709_050 Hb_053709_050 Hb_002693_030--Hb_053709_050 Hb_002534_130 Hb_002534_130 Hb_002693_030--Hb_002534_130 Hb_026198_010 Hb_026198_010 Hb_002693_030--Hb_026198_010 Hb_000723_230 Hb_000723_230 Hb_006637_030--Hb_000723_230 Hb_006637_030--Hb_053709_050 Hb_006637_030--Hb_026198_010 Hb_189216_010 Hb_189216_010 Hb_006637_030--Hb_189216_010 Hb_005653_070 Hb_005653_070 Hb_006637_030--Hb_005653_070 Hb_007850_030--Hb_053709_050 Hb_001633_090 Hb_001633_090 Hb_007850_030--Hb_001633_090 Hb_004994_210 Hb_004994_210 Hb_007850_030--Hb_004994_210 Hb_001482_050 Hb_001482_050 Hb_007850_030--Hb_001482_050 Hb_000227_390 Hb_000227_390 Hb_007850_030--Hb_000227_390 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020 Hb_053709_050--Hb_001633_090 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_053709_050--Hb_189216_010 Hb_005686_130 Hb_005686_130 Hb_002534_130--Hb_005686_130 Hb_000193_260 Hb_000193_260 Hb_002534_130--Hb_000193_260 Hb_001269_620 Hb_001269_620 Hb_002534_130--Hb_001269_620 Hb_015778_040 Hb_015778_040 Hb_002534_130--Hb_015778_040 Hb_001277_050 Hb_001277_050 Hb_002534_130--Hb_001277_050 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2095 47.86 110.471 94.7057 17.4296 20.8412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.4475 64.615 44.1079 69.631 50.3003

CAGE analysis