Hb_002693_040

Information

Type -
Description -
Location Contig2693: 69614-70867
Sequence    

Annotation

kegg
ID pda:103695926
description hypersensitive-induced response protein 1
nr
ID ABS01349.1
description hypersensitive-induced response protein [Carica papaya]
swissprot
ID Q9FM19
description Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1
trembl
ID A6YGE4
description Hypersensitive-induced response protein OS=Carica papaya PE=2 SV=1
Gene Ontology
ID GO:0016020
description hypersensitive-induced response protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28100: 69703-70087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002693_040 0.0 - - hypersensitive-induced response protein [Carica papaya]
2 Hb_010288_050 0.1347496488 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
3 Hb_002221_010 0.1599522295 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
4 Hb_007632_200 0.1613368647 - - hypothetical protein L484_018221 [Morus notabilis]
5 Hb_000165_270 0.1643863934 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
6 Hb_002218_050 0.175460762 - - SSXT family protein isoform 2, partial [Theobroma cacao]
7 Hb_008948_090 0.1828360998 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_001279_050 0.1840802246 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
9 Hb_005839_080 0.190522676 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
10 Hb_114292_010 0.2001171493 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001040_050 0.2009331298 - - Stem-specific protein TSJT1, putative [Ricinus communis]
12 Hb_001102_030 0.2024830273 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_001433_120 0.2035808627 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
14 Hb_044662_050 0.2042464696 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
15 Hb_005162_120 0.2081141182 - - ferric reductase oxidase [Manihot esculenta]
16 Hb_003964_050 0.20871321 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
17 Hb_002307_040 0.2104850868 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000367_240 0.2126929368 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
19 Hb_000261_530 0.2177490029 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
20 Hb_010672_040 0.2180217582 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002693_040 Hb_002693_040 Hb_010288_050 Hb_010288_050 Hb_002693_040--Hb_010288_050 Hb_002221_010 Hb_002221_010 Hb_002693_040--Hb_002221_010 Hb_007632_200 Hb_007632_200 Hb_002693_040--Hb_007632_200 Hb_000165_270 Hb_000165_270 Hb_002693_040--Hb_000165_270 Hb_002218_050 Hb_002218_050 Hb_002693_040--Hb_002218_050 Hb_008948_090 Hb_008948_090 Hb_002693_040--Hb_008948_090 Hb_010288_050--Hb_007632_200 Hb_010288_050--Hb_000165_270 Hb_005162_120 Hb_005162_120 Hb_010288_050--Hb_005162_120 Hb_010288_050--Hb_008948_090 Hb_006909_050 Hb_006909_050 Hb_010288_050--Hb_006909_050 Hb_000115_190 Hb_000115_190 Hb_002221_010--Hb_000115_190 Hb_001279_050 Hb_001279_050 Hb_002221_010--Hb_001279_050 Hb_002221_010--Hb_005162_120 Hb_002221_010--Hb_002218_050 Hb_114292_010 Hb_114292_010 Hb_002221_010--Hb_114292_010 Hb_001040_050 Hb_001040_050 Hb_007632_200--Hb_001040_050 Hb_005839_080 Hb_005839_080 Hb_007632_200--Hb_005839_080 Hb_004650_040 Hb_004650_040 Hb_007632_200--Hb_004650_040 Hb_012633_010 Hb_012633_010 Hb_007632_200--Hb_012633_010 Hb_006519_020 Hb_006519_020 Hb_007632_200--Hb_006519_020 Hb_001102_030 Hb_001102_030 Hb_007632_200--Hb_001102_030 Hb_001433_120 Hb_001433_120 Hb_000165_270--Hb_001433_120 Hb_007218_010 Hb_007218_010 Hb_000165_270--Hb_007218_010 Hb_010672_040 Hb_010672_040 Hb_000165_270--Hb_010672_040 Hb_007157_050 Hb_007157_050 Hb_000165_270--Hb_007157_050 Hb_000347_160 Hb_000347_160 Hb_000165_270--Hb_000347_160 Hb_005854_060 Hb_005854_060 Hb_000165_270--Hb_005854_060 Hb_000388_040 Hb_000388_040 Hb_002218_050--Hb_000388_040 Hb_002218_050--Hb_114292_010 Hb_002218_050--Hb_001040_050 Hb_002218_050--Hb_005162_120 Hb_001143_200 Hb_001143_200 Hb_002218_050--Hb_001143_200 Hb_002218_050--Hb_000115_190 Hb_001061_010 Hb_001061_010 Hb_008948_090--Hb_001061_010 Hb_008948_090--Hb_006909_050 Hb_177533_010 Hb_177533_010 Hb_008948_090--Hb_177533_010 Hb_001519_080 Hb_001519_080 Hb_008948_090--Hb_001519_080 Hb_004881_040 Hb_004881_040 Hb_008948_090--Hb_004881_040 Hb_000592_120 Hb_000592_120 Hb_008948_090--Hb_000592_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241668 0.377527 15.0001 0.561859 0.052036 0.102398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.30782 0.290472 0.176215 0.703818 0.489137

CAGE analysis