Hb_002701_010

Information

Type -
Description -
Location Contig2701: 3922-11225
Sequence    

Annotation

kegg
ID rcu:RCOM_0791410
description hypothetical protein
nr
ID XP_012088106.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JWE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25621 PE=4 SV=1
Gene Ontology
ID GO:0005768
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28297: 3833-3992 , PASA_asmbl_28298: 4050-4182 , PASA_asmbl_28299: 4198-11157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_010 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_022318_020 0.0874861461 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
3 Hb_163256_020 0.0885793896 - - fructokinase [Manihot esculenta]
4 Hb_006355_040 0.0916610563 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
5 Hb_000424_200 0.0947087354 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
6 Hb_000099_150 0.108885063 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
7 Hb_002307_310 0.1097698108 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
8 Hb_000723_230 0.1099076556 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
9 Hb_000465_300 0.1118237891 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
10 Hb_002534_100 0.1120072448 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
11 Hb_006256_030 0.1129759163 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
12 Hb_003669_020 0.1146320983 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
13 Hb_005843_140 0.1177736253 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
14 Hb_004712_210 0.1179290044 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
15 Hb_002060_010 0.1183760619 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
16 Hb_004005_020 0.119224006 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_000225_060 0.1209773472 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
18 Hb_002631_180 0.12113352 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
19 Hb_001016_100 0.1232732044 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
20 Hb_001718_030 0.1237351166 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002701_010 Hb_002701_010 Hb_022318_020 Hb_022318_020 Hb_002701_010--Hb_022318_020 Hb_163256_020 Hb_163256_020 Hb_002701_010--Hb_163256_020 Hb_006355_040 Hb_006355_040 Hb_002701_010--Hb_006355_040 Hb_000424_200 Hb_000424_200 Hb_002701_010--Hb_000424_200 Hb_000099_150 Hb_000099_150 Hb_002701_010--Hb_000099_150 Hb_002307_310 Hb_002307_310 Hb_002701_010--Hb_002307_310 Hb_022318_020--Hb_163256_020 Hb_006256_030 Hb_006256_030 Hb_022318_020--Hb_006256_030 Hb_000448_050 Hb_000448_050 Hb_022318_020--Hb_000448_050 Hb_001648_030 Hb_001648_030 Hb_022318_020--Hb_001648_030 Hb_001016_100 Hb_001016_100 Hb_022318_020--Hb_001016_100 Hb_004324_090 Hb_004324_090 Hb_163256_020--Hb_004324_090 Hb_000465_300 Hb_000465_300 Hb_163256_020--Hb_000465_300 Hb_163256_020--Hb_006256_030 Hb_158445_010 Hb_158445_010 Hb_163256_020--Hb_158445_010 Hb_000310_020 Hb_000310_020 Hb_163256_020--Hb_000310_020 Hb_001718_030 Hb_001718_030 Hb_006355_040--Hb_001718_030 Hb_005843_140 Hb_005843_140 Hb_006355_040--Hb_005843_140 Hb_001188_030 Hb_001188_030 Hb_006355_040--Hb_001188_030 Hb_002968_040 Hb_002968_040 Hb_006355_040--Hb_002968_040 Hb_003669_020 Hb_003669_020 Hb_006355_040--Hb_003669_020 Hb_006198_070 Hb_006198_070 Hb_006355_040--Hb_006198_070 Hb_013399_050 Hb_013399_050 Hb_000424_200--Hb_013399_050 Hb_000424_200--Hb_158445_010 Hb_007037_020 Hb_007037_020 Hb_000424_200--Hb_007037_020 Hb_000327_060 Hb_000327_060 Hb_000424_200--Hb_000327_060 Hb_000424_200--Hb_006355_040 Hb_000424_200--Hb_005843_140 Hb_001691_140 Hb_001691_140 Hb_000099_150--Hb_001691_140 Hb_000136_260 Hb_000136_260 Hb_000099_150--Hb_000136_260 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_002078_140 Hb_002078_140 Hb_000099_150--Hb_002078_140 Hb_004712_210 Hb_004712_210 Hb_002307_310--Hb_004712_210 Hb_002307_310--Hb_022318_020 Hb_015183_060 Hb_015183_060 Hb_002307_310--Hb_015183_060 Hb_001604_150 Hb_001604_150 Hb_002307_310--Hb_001604_150 Hb_002307_310--Hb_006355_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18265 7.53326 8.31112 6.66141 2.12798 2.14134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91004 15.9639 9.21787 8.67347 5.52848

CAGE analysis