Hb_002701_020

Information

Type -
Description -
Location Contig2701: 14007-18649
Sequence    

Annotation

kegg
ID rcu:RCOM_0791090
description Transcription factor BIM1, putative
nr
ID XP_012088108.1
description PREDICTED: transcription factor BIM2 [Jatropha curcas]
swissprot
ID Q9CAA4
description Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1
trembl
ID A0A067JKC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28302: 14957-16343 , PASA_asmbl_28303: 16344-18435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_020 0.0 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
2 Hb_002835_080 0.0731733936 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
3 Hb_000227_080 0.0747797661 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003929_250 0.076231372 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
5 Hb_000428_050 0.0798265329 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
6 Hb_009265_070 0.0808114621 - - PREDICTED: uncharacterized protein LOC105649623 isoform X1 [Jatropha curcas]
7 Hb_000056_200 0.0855515458 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
8 Hb_002863_050 0.0863650752 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_001776_140 0.0883084658 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000243_030 0.0885041506 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
11 Hb_002660_080 0.0890020523 - - 60S ribosomal protein L12A [Hevea brasiliensis]
12 Hb_001226_160 0.0901920918 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
13 Hb_000904_070 0.0909681847 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
14 Hb_005333_070 0.0909903914 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000465_460 0.0913364782 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
16 Hb_032225_010 0.0921428455 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_000093_160 0.0925249676 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
18 Hb_002182_080 0.0930478792 - - 3-5 exonuclease, putative [Ricinus communis]
19 Hb_000563_320 0.093375684 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
20 Hb_000690_180 0.0935189049 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_002701_020 Hb_002701_020 Hb_002835_080 Hb_002835_080 Hb_002701_020--Hb_002835_080 Hb_000227_080 Hb_000227_080 Hb_002701_020--Hb_000227_080 Hb_003929_250 Hb_003929_250 Hb_002701_020--Hb_003929_250 Hb_000428_050 Hb_000428_050 Hb_002701_020--Hb_000428_050 Hb_009265_070 Hb_009265_070 Hb_002701_020--Hb_009265_070 Hb_000056_200 Hb_000056_200 Hb_002701_020--Hb_000056_200 Hb_019280_040 Hb_019280_040 Hb_002835_080--Hb_019280_040 Hb_148644_010 Hb_148644_010 Hb_002835_080--Hb_148644_010 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_000010_330 Hb_000010_330 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030 Hb_058999_020 Hb_058999_020 Hb_000227_080--Hb_058999_020 Hb_000215_110 Hb_000215_110 Hb_000227_080--Hb_000215_110 Hb_003525_010 Hb_003525_010 Hb_000227_080--Hb_003525_010 Hb_000227_080--Hb_002182_080 Hb_000317_240 Hb_000317_240 Hb_000227_080--Hb_000317_240 Hb_003416_010 Hb_003416_010 Hb_000227_080--Hb_003416_010 Hb_000340_300 Hb_000340_300 Hb_003929_250--Hb_000340_300 Hb_000920_180 Hb_000920_180 Hb_003929_250--Hb_000920_180 Hb_009557_070 Hb_009557_070 Hb_003929_250--Hb_009557_070 Hb_003929_250--Hb_000056_200 Hb_096563_010 Hb_096563_010 Hb_003929_250--Hb_096563_010 Hb_000465_460 Hb_000465_460 Hb_003929_250--Hb_000465_460 Hb_001776_140 Hb_001776_140 Hb_000428_050--Hb_001776_140 Hb_012022_160 Hb_012022_160 Hb_000428_050--Hb_012022_160 Hb_000428_050--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_000428_050--Hb_007904_200 Hb_003195_070 Hb_003195_070 Hb_000428_050--Hb_003195_070 Hb_001675_180 Hb_001675_180 Hb_000428_050--Hb_001675_180 Hb_000988_080 Hb_000988_080 Hb_009265_070--Hb_000988_080 Hb_000690_180 Hb_000690_180 Hb_009265_070--Hb_000690_180 Hb_004545_060 Hb_004545_060 Hb_009265_070--Hb_004545_060 Hb_003055_120 Hb_003055_120 Hb_009265_070--Hb_003055_120 Hb_004032_010 Hb_004032_010 Hb_009265_070--Hb_004032_010 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.51396 7.77222 5.8353 9.2455 10.6766 16.3241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27737 19.1969 11.9169 5.42077 6.30733

CAGE analysis